Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG730_RS27560 Genome accession   NZ_CP108414
Coordinates   6069182..6069832 (+) Length   216 a.a.
NCBI ID   WP_243334852.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01298     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6064182..6074832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG730_RS27525 (OG730_27505) - 6064978..6065433 (+) 456 WP_327306754.1 HD domain-containing protein -
  OG730_RS27530 (OG730_27510) - 6065564..6065758 (+) 195 WP_327306755.1 hypothetical protein -
  OG730_RS27535 (OG730_27515) - 6065856..6066101 (-) 246 WP_327306756.1 hypothetical protein -
  OG730_RS27550 (OG730_27530) tig 6066741..6068135 (+) 1395 WP_327306757.1 trigger factor -
  OG730_RS27555 (OG730_27535) - 6068457..6069074 (+) 618 WP_250739480.1 ATP-dependent Clp protease proteolytic subunit -
  OG730_RS27560 (OG730_27540) clpP 6069182..6069832 (+) 651 WP_243334852.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG730_RS27565 (OG730_27545) clpX 6069986..6071272 (+) 1287 WP_250739478.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG730_RS27570 (OG730_27550) - 6071776..6072741 (-) 966 WP_327306758.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23611.84 Da        Isoelectric Point: 4.5562

>NTDB_id=660257 OG730_RS27560 WP_243334852.1 6069182..6069832(+) (clpP) [Streptomyces sp. NBC_01298]
MNNLSPASGLYTGAPVDNRYVVPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMDPDRDIYL
YINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGAPGKRMALPNARVLIHQPSGGTGREQLSDLEIAAN
EILRMRDQLENMLATHSSTPIEKIRDDIERDKILTAQDALAYGLIDQVVATRKTSN

Nucleotide


Download         Length: 651 bp        

>NTDB_id=660257 OG730_RS27560 WP_243334852.1 6069182..6069832(+) (clpP) [Streptomyces sp. NBC_01298]
ATGAACAACCTTTCTCCCGCGAGCGGCCTCTACACCGGCGCGCCGGTGGACAACCGCTACGTCGTGCCGCGCTTCGTGGA
GCGCACCTCGCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCATCATCTTCCTCGGCGTGCAGA
TCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTACCTG
TACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGTGAAGCCGGACATCTC
GACGGTGTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGCGCCCCCGGCAAGCGCATGGCGCTGC
CGAACGCCCGCGTGCTGATCCACCAGCCCTCGGGCGGCACCGGCCGCGAGCAGCTCTCCGACCTGGAGATCGCGGCCAAC
GAGATCCTGCGCATGCGCGACCAGCTGGAGAACATGCTGGCCACGCACTCCTCGACCCCGATCGAGAAGATCCGCGACGA
CATCGAGCGCGACAAGATCCTCACGGCCCAGGACGCGCTGGCGTACGGCCTGATCGACCAGGTCGTCGCGACCCGTAAGA
CTTCGAACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(31-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.91

87.5

0.463
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.128

87.037

0.454
  clpP Streptococcus pneumoniae D39

47.644

88.426

0.421
  clpP Streptococcus pneumoniae R6

47.644

88.426

0.421
  clpP Streptococcus pneumoniae TIGR4

47.644

88.426

0.421
  clpP Streptococcus pneumoniae Rx1

47.644

88.426

0.421
  clpP Streptococcus thermophilus LMD-9

46.392

89.815

0.417
  clpP Streptococcus thermophilus LMG 18311

46.392

89.815

0.417
  clpP Streptococcus mutans UA159

47.368

87.963

0.417
  clpP Streptococcus pyogenes JRS4

46.316

87.963

0.407
  clpP Streptococcus pyogenes MGAS315

46.316

87.963

0.407
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

88.426

0.407
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

88.426

0.398