NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG622_RS32920	Genome accession	NZ_CP108394
Coordinates	7458510..7459190 (+)	Length	226 a.a.
NCBI ID	WP_037703089.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01314
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 7453510..7464190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG622_RS32885 (OG622_32985)	-	7453922..7454116 (+)	195	WP_371580259.1	hypothetical protein	-
OG622_RS32890 (OG622_32990)	-	7454422..7454889 (-)	468	WP_371580260.1	DUF6083 domain-containing protein	-
OG622_RS32910 (OG622_33010)	tig	7455929..7457329 (+)	1401	WP_371580261.1	trigger factor	-
OG622_RS32915 (OG622_33015)	clpP	7457759..7458367 (+)	609	WP_046703654.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG622_RS32920 (OG622_33020)	clpP	7458510..7459190 (+)	681	WP_037703089.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG622_RS32925 (OG622_33025)	clpX	7459394..7460680 (+)	1287	WP_371580262.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG622_RS32930 (OG622_33030)	-	7460892..7461176 (+)	285	WP_371580263.1	hypothetical protein	-
OG622_RS32935 (OG622_33035)	-	7461324..7462271 (-)	948	WP_371580264.1	hypothetical protein	-

Sequence

Protein

Download Length: 226 a.a. Molecular weight: 25096.49 Da Isoelectric Point: 4.6487

                                >NTDB_id=660169 OG622_RS32920 WP_037703089.1 7458510..7459190(+) (clpP) [Streptomyces sp. NBC_01314]

MNDFPGSGIYARTEAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP

DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD

LEIAANEILRMRAQLEDMLARHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNNSVR

Nucleotide

Download Length: 681 bp

                                >NTDB_id=660169 OG622_RS32920 WP_037703089.1 7458510..7459190(+) (clpP) [Streptomyces sp. NBC_01314]

GTGAACGACTTCCCCGGCAGCGGCATCTACGCCCGCACCGAGGCCGAGTACACCGGCCCTCGCGCCGAGTCCCGTTATGT

GATCCCACGTTTCGTCGAGCGCACCTCGCAGGGCGTCCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA

TCTTCCTCGGGGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC

GACCGGGACATCTCCGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT

CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG

GCAAGCGCATGGCGCTGCCGAACGCCCGCGTCCTGATCCACCAGCCGTACAGCGAGACGGGCCGCGGTCAGGTCTCCGAC

CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGTGCGCAGCTGGAGGACATGCTGGCCAGGCACTCGACCACGCCGAT

CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGTACGGCCTGATCGACCAGA

TCATCTCCACGCGGAAGATGAACAACAACAGCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.105	84.071	0.438
clpP	Streptococcus mutans UA159	45.366	90.708	0.412
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.468	83.186	0.412
clpP	Lactococcus lactis subsp. cremoris KW2	45.05	89.381	0.403
clpP	Streptococcus pyogenes JRS4	45.274	88.938	0.403
clpP	Streptococcus pyogenes MGAS315	45.274	88.938	0.403
clpP	Streptococcus thermophilus LMD-9	46.154	86.283	0.398
clpP	Streptococcus thermophilus LMG 18311	46.154	86.283	0.398
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.059	89.381	0.394
clpP	Streptococcus pneumoniae Rx1	44.388	86.726	0.385
clpP	Streptococcus pneumoniae D39	44.388	86.726	0.385
clpP	Streptococcus pneumoniae R6	44.388	86.726	0.385
clpP	Streptococcus pneumoniae TIGR4	44.388	86.726	0.385

Detailed information NTG0660169