Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG395_RS34125 Genome accession   NZ_CP108390
Coordinates   7505992..7506684 (+) Length   230 a.a.
NCBI ID   WP_266985683.1    Uniprot ID   A0ABV5RA99
Organism   Streptomyces sp. NBC_01320     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7500992..7511684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG395_RS34095 (OG395_34065) - 7501256..7502410 (-) 1155 WP_327246355.1 acyltransferase family protein -
  OG395_RS34100 (OG395_34070) - 7502892..7503086 (+) 195 WP_037698756.1 hypothetical protein -
  OG395_RS34115 (OG395_34085) tig 7503641..7505035 (+) 1395 WP_327246356.1 trigger factor -
  OG395_RS34120 (OG395_34090) - 7505334..7505939 (+) 606 WP_327249541.1 ATP-dependent Clp protease proteolytic subunit -
  OG395_RS34125 (OG395_34095) clpP 7505992..7506684 (+) 693 WP_266985683.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG395_RS34130 (OG395_34100) clpX 7506842..7508140 (+) 1299 WP_030921263.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG395_RS34135 (OG395_34105) - 7508217..7509221 (-) 1005 WP_327246357.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25060.51 Da        Isoelectric Point: 4.5163

>NTDB_id=659933 OG395_RS34125 WP_266985683.1 7505992..7506684(+) (clpP) [Streptomyces sp. NBC_01320]
MVNTDMSNYPGLPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLE
SMDPDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGRE
QLSDLEIAANEILRMRTQLEEMLAKHSTTPLEKIRDDIERDKILTAEDALAYGLVDQIVSTRKSAAGAMA

Nucleotide


Download         Length: 693 bp        

>NTDB_id=659933 OG395_RS34125 WP_266985683.1 7505992..7506684(+) (clpP) [Streptomyces sp. NBC_01320]
ATGGTGAACACCGACATGAGCAACTACCCCGGCCTCCCCGGCGCATCCGCCAGCGGCCTCTACACCGGCCCGCAGGTGGA
CAACCGCTACATCGTTCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGGGAGTACGACCCGTATGCGAAGCTTTTCG
AGGAGCGCGTGATCTTCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAG
TCGATGGACCCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGA
CACGATGCAGTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCG
CCGGCACGCCCGGCAAGCGCATGGCTCTGCCCAACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAG
CAGCTCTCCGACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTC
CACCACGCCGCTGGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCCCTCGCCTACGGTC
TCGTCGACCAGATCGTCTCCACCCGCAAGAGTGCGGCCGGAGCGATGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(41-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

82.609

0.422
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

82.174

0.396
  clpP Streptococcus thermophilus LMD-9

44.33

84.348

0.374
  clpP Streptococcus pyogenes JRS4

44.33

84.348

0.374
  clpP Streptococcus thermophilus LMG 18311

44.33

84.348

0.374
  clpP Streptococcus pyogenes MGAS315

44.33

84.348

0.374
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

83.043

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

83.043

0.37
  clpP Streptococcus mutans UA159

43.814

84.348

0.37
  clpP Streptococcus pneumoniae TIGR4

44.041

83.913

0.37
  clpP Streptococcus pneumoniae D39

44.041

83.913

0.37
  clpP Streptococcus pneumoniae Rx1

44.041

83.913

0.37
  clpP Streptococcus pneumoniae R6

44.041

83.913

0.37