Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG772_RS24310 Genome accession   NZ_CP108388
Coordinates   5269856..5270536 (+) Length   226 a.a.
NCBI ID   WP_323183850.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01321     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5264856..5275536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG772_RS24280 (OG772_24290) - 5265037..5266191 (-) 1155 WP_327349865.1 acyltransferase family protein -
  OG772_RS24285 (OG772_24295) - 5266671..5266865 (+) 195 WP_266746187.1 hypothetical protein -
  OG772_RS24300 (OG772_24310) tig 5267478..5268902 (+) 1425 WP_327349866.1 trigger factor -
  OG772_RS24305 (OG772_24315) clpP 5269166..5269774 (+) 609 WP_266752174.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG772_RS24310 (OG772_24320) clpP 5269856..5270536 (+) 681 WP_323183850.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG772_RS24315 (OG772_24325) clpX 5270694..5271992 (+) 1299 WP_266746184.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG772_RS24320 (OG772_24330) - 5272073..5273071 (-) 999 WP_327350202.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24767.18 Da        Isoelectric Point: 4.6883

>NTDB_id=659839 OG772_RS24310 WP_323183850.1 5269856..5270536(+) (clpP) [Streptomyces sp. NBC_01321]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKIRDDIERDKILTAEEALAYGLVDQIVSTRKSAATAA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=659839 OG772_RS24310 WP_323183850.1 5269856..5270536(+) (clpP) [Streptomyces sp. NBC_01321]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGATA
CATTGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCGGGTACGC
CCGGCAAGCGGATGGCGCTGCCCAACGCCCGTATCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGGGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACTACGCC
GCTGGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGAAGCCCTCGCCTACGGTCTCGTCGACC
AGATCGTGTCGACCCGCAAGAGCGCGGCCACGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

84.071

0.429
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.206

83.628

0.412
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

84.513

0.385
  clpP Streptococcus thermophilus LMG 18311

44.845

85.841

0.385
  clpP Streptococcus thermophilus LMD-9

44.845

85.841

0.385
  clpP Streptococcus pyogenes JRS4

45.789

84.071

0.385
  clpP Streptococcus pyogenes MGAS315

45.789

84.071

0.385
  clpP Streptococcus pneumoniae Rx1

44.792

84.956

0.381
  clpP Streptococcus pneumoniae D39

44.792

84.956

0.381
  clpP Streptococcus pneumoniae R6

44.792

84.956

0.381
  clpP Streptococcus pneumoniae TIGR4

44.792

84.956

0.381
  clpP Streptococcus mutans UA159

45.263

84.071

0.381
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

84.513

0.381