Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG384_RS11240 Genome accession   NZ_CP108385
Coordinates   2475946..2476629 (-) Length   227 a.a.
NCBI ID   WP_024492986.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01324     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2470946..2481629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG384_RS11230 (OG384_11235) - 2473419..2474414 (+) 996 WP_327336833.1 hypothetical protein -
  OG384_RS11235 (OG384_11240) clpX 2474490..2475788 (-) 1299 WP_327336834.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG384_RS11240 (OG384_11245) clpP 2475946..2476629 (-) 684 WP_024492986.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG384_RS11245 (OG384_11250) - 2476705..2477310 (-) 606 WP_164494417.1 ATP-dependent Clp protease proteolytic subunit -
  OG384_RS11250 (OG384_11255) tig 2477575..2478972 (-) 1398 WP_327336835.1 trigger factor -
  OG384_RS11265 (OG384_11270) - 2479502..2480647 (-) 1146 WP_327336836.1 tyrosine-type recombinase/integrase -
  OG384_RS11270 (OG384_11275) - 2480647..2480859 (-) 213 WP_327336837.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24704.04 Da        Isoelectric Point: 4.6747

>NTDB_id=659739 OG384_RS11240 WP_024492986.1 2475946..2476629(-) (clpP) [Streptomyces sp. NBC_01324]
MVNTHMNNFSGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRLALPNARILIHQPSSQTGREQLS
DLEIAANEILRMRTQLEELLAKHSTTPIEKIRDDIERDKILTADDALAYGLVDQIVATRKSAAGAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=659739 OG384_RS11240 WP_024492986.1 2475946..2476629(-) (clpP) [Streptomyces sp. NBC_01324]
ATGGTGAACACCCACATGAACAACTTCTCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGGGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGTACCC
CGGGCAAGCGCCTGGCGCTGCCGAACGCGCGTATCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGGACCCAGCTGGAGGAGCTGCTGGCCAAGCACTCCACCACGCC
GATCGAGAAGATCCGTGACGACATCGAGCGGGACAAGATCCTGACCGCCGATGACGCCCTGGCCTACGGCCTGGTCGACC
AGATCGTCGCGACCCGCAAGAGCGCGGCCGGAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.735

83.26

0.414
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.677

83.26

0.405
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus pneumoniae Rx1

44.792

84.581

0.379
  clpP Streptococcus pneumoniae D39

44.792

84.581

0.379
  clpP Streptococcus pneumoniae R6

44.792

84.581

0.379
  clpP Streptococcus pneumoniae TIGR4

44.792

84.581

0.379
  clpP Streptococcus pyogenes MGAS315

45.263

83.7

0.379
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Streptococcus pyogenes JRS4

45.263

83.7

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37