Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilT   Type   Machinery gene
Locus tag   MJ592_RS15110 Genome accession   NZ_CP092702
Coordinates   3094079..3095059 (-) Length   326 a.a.
NCBI ID   WP_001326494.1    Uniprot ID   D3GUL4
Organism   Escherichia coli strain S-P-C-029.01     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3089079..3100059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ592_RS15080 (MJ592_15080) yggI 3089734..3090231 (+) 498 WP_001300769.1 SprT family zinc-dependent metalloprotease -
  MJ592_RS15085 (MJ592_15085) endA 3090326..3091033 (+) 708 WP_000286500.1 deoxyribonuclease I -
  MJ592_RS15090 (MJ592_15090) rsmE 3091113..3091844 (+) 732 WP_001222509.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  MJ592_RS15095 (MJ592_15095) gshB 3091857..3092807 (+) 951 WP_000593273.1 glutathione synthase -
  MJ592_RS15100 (MJ592_15100) yqgE 3092916..3093479 (+) 564 WP_001053178.1 YqgE/AlgH family protein -
  MJ592_RS15105 (MJ592_15105) ruvX 3093479..3093895 (+) 417 WP_000017106.1 Holliday junction resolvase RuvX -
  MJ592_RS15110 (MJ592_15110) pilT 3094079..3095059 (-) 981 WP_001326494.1 type IV pilus twitching motility protein PilT Machinery gene
  MJ592_RS15115 (MJ592_15115) yggS 3095077..3095781 (+) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  MJ592_RS15120 (MJ592_15120) yggT 3095799..3096365 (+) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  MJ592_RS15125 (MJ592_15125) yggU 3096362..3096652 (+) 291 WP_000994920.1 DUF167 family protein YggU -
  MJ592_RS15130 (MJ592_15130) rdgB 3096660..3097253 (+) 594 WP_001174777.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  MJ592_RS15135 (MJ592_15135) hemW 3097246..3098382 (+) 1137 WP_000239943.1 radical SAM family heme chaperone HemW -
  MJ592_RS15140 (MJ592_15140) yggM 3098537..3099544 (-) 1008 WP_000745210.1 DUF1202 family protein -

Sequence


Protein


Download         Length: 326 a.a.        Molecular weight: 35994.16 Da        Isoelectric Point: 6.0804

>NTDB_id=659739 MJ592_RS15110 WP_001326494.1 3094079..3095059(-) (pilT) [Escherichia coli strain S-P-C-029.01]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDTPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQHR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=659739 MJ592_RS15110 WP_001326494.1 3094079..3095059(-) (pilT) [Escherichia coli strain S-P-C-029.01]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATTCGCGGCAGAATGGAAGCTGCGCCGTTTGATACGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCCGTGTCGCTGGCGGAAAACCAGCGATTGCGTGGC
AGCGCATTCGCGCAACGGCATGGCATTTCGCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CGCACCAACGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGTGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTTGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAAATTGGTTTGCACTGTATGACGTTCGCATCGGGATTGCG
GGCCGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCACTGACGG
CGGCAGAAACCGGGCATTTGGTGCTGGCAACATTACATACGCGTGGTGCCGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCGGCGCAGGAAAAAGACCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCAGTGCTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTATTTGAATTGCTGATTAACACACCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCACCGG
GTGGGGGAAGGGCGTTTGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB D3GUL4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.235

100

0.494

  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.235

100

0.494

  pilT Neisseria meningitidis 8013

48.476

100

0.488

  pilT Neisseria gonorrhoeae MS11

48.171

100

0.485

  pilT Acinetobacter baumannii D1279779

46.483

100

0.466

  pilT Acinetobacter baylyi ADP1

46.483

100

0.466

  pilT Acinetobacter nosocomialis M2

46.483

100

0.466

  pilT Acinetobacter baumannii strain A118

46.483

100

0.466

  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466

  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463

  pilT Legionella pneumophila strain ERS1305867

45.912

97.546

0.448

  pilT Legionella pneumophila strain Lp02

45.912

97.546

0.448

  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.824

97.546

0.408

  pilU Vibrio cholerae strain A1552

40.373

98.773

0.399

  pilU Pseudomonas stutzeri DSM 10701

38.554

100

0.393

  pilU Acinetobacter baylyi ADP1

36.061

100

0.365

  pilB Legionella pneumophila strain ERS1305867

30.89

100

0.362