Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MKD32_RS18850 Genome accession   NZ_CP092630
Coordinates   4300149..4301420 (+) Length   423 a.a.
NCBI ID   WP_240292607.1    Uniprot ID   -
Organism   Shewanella xiamenensis strain CQ-Y1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4295149..4306420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD32_RS18830 (MKD32_18830) ampD 4295563..4296102 (-) 540 WP_172587754.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MKD32_RS18835 (MKD32_18835) nadC 4296333..4297214 (+) 882 WP_088586229.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MKD32_RS20700 - 4297819..4298238 (+) 420 WP_275892054.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MKD32_RS18845 (MKD32_18845) pilB 4298321..4300030 (+) 1710 WP_172589290.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MKD32_RS18850 (MKD32_18850) pilC 4300149..4301420 (+) 1272 WP_240292607.1 type II secretion system F family protein Machinery gene
  MKD32_RS18855 (MKD32_18855) pilD 4301555..4302481 (+) 927 WP_037426360.1 A24 family peptidase Machinery gene
  MKD32_RS18860 (MKD32_18860) coaE 4302622..4303239 (+) 618 WP_240292608.1 dephospho-CoA kinase -
  MKD32_RS18865 (MKD32_18865) zapD 4303232..4303966 (+) 735 WP_037413632.1 cell division protein ZapD -
  MKD32_RS18870 (MKD32_18870) yacG 4304048..4304257 (+) 210 WP_037413634.1 DNA gyrase inhibitor YacG -
  MKD32_RS18875 (MKD32_18875) mutT 4304342..4304737 (+) 396 WP_140907787.1 8-oxo-dGTP diphosphatase MutT -
  MKD32_RS18880 (MKD32_18880) - 4304881..4305417 (+) 537 WP_037426365.1 thioredoxin family protein -
  MKD32_RS18885 (MKD32_18885) - 4305492..4306418 (-) 927 WP_037413637.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46084.46 Da        Isoelectric Point: 10.3351

>NTDB_id=659310 MKD32_RS18850 WP_240292607.1 4300149..4301420(+) (pilC) [Shewanella xiamenensis strain CQ-Y1]
MATATTVKKPRPKKIEQKSQPKIYTFEWKGVNRDGQKTSGELRGASAAEVRSKLKSQGVNPKTVRKQSAALFKLGDAKIT
PMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLRISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQIVRDRVDEVILKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKMRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=659310 MKD32_RS18850 WP_240292607.1 4300149..4301420(+) (pilC) [Shewanella xiamenensis strain CQ-Y1]
ATGGCTACGGCAACCACAGTAAAAAAGCCTCGCCCAAAAAAGATTGAGCAAAAAAGCCAACCTAAAATTTATACCTTTGA
ATGGAAAGGTGTTAATCGCGACGGTCAAAAAACCAGTGGCGAACTGAGGGGGGCCTCTGCTGCTGAGGTTCGTAGCAAGT
TAAAATCTCAAGGGGTAAATCCTAAAACCGTTCGCAAACAATCGGCCGCCTTATTTAAATTAGGCGATGCCAAAATTACC
CCTATGGATATTGCGATGGTAACTCGGCAAATTGCCACCATGCTTGCCGCTGGGGTGCCATTAGTGACTACCATTGAACT
ACTGGGTCGCGGCCATGAAAAAGCAAAAATGCGTGAGCTGTTAGCGACAATTCTATCGGAGATCCAATCGGGTATTCCCT
TATCCGATGCTTTGCGCCCTCACCGACGCTATTTTGATGATCTTTATGTCGATTTAGTGGCGGCGGGTGAACATTCAGGC
TCACTCGATGTAGTGTTTGATCGTATTGCGACCTACCGTGAAAAATCTGAAGCATTAAAATCCAAAATTAAAAAGGCCAT
GTTTTATCCGGCAGCAGTAGTAATAGTCGCTATTTTAGTAACAGCACTATTATTACTGTTTGTGGTGCCACAATTTGAAG
ATATTTTTAAGGGCTTTGGCGCCGAGTTGCCTGCATTTACCCAATTGGTATTGCGCATCTCCCGCGGCCTACAATCCTCT
TGGTATATCTTTTTGGGTGCCATTGTGGCTGGTGTGTTTTTATTTGTCCGCGCCCACCGAAACTCGCAAATCGTGAGGGA
CAGAGTTGACGAAGTCATCTTAAAAATTCCAGCTATTGGTCCCATTCTACACAAAGGCGCTATGGCACGTTTTGCCCGCA
CCTTAGCCACTACTTTTGCCGCAGGTGTACCCTTAATCGACGGCTTAGAATCCGCTGCAGGAGCATCGGGAAATGCGGTA
TACCGTAAAGCCATTTTAAAAATGCGCCAAGAAGTGATGGCCGGGATGCAAATGAACGTGGCAATGCGAACCACAGGGCT
GTTCCCCGATATGCTGATCCAAATGGTGATGATTGGCGAAGAATCAGGCTCACTTGATAATATGCTTAATAAAGTTTCAA
CTATCTATGAGATGCAAGTCGATGATGCTGTTGATGGTTTATCCAGCCTAATTGAACCTATCATGATGGTGGTCATTGGT
ACTGTTGTTGGTGGTCTTATTGTCGCTATGTATTTACCCATCTTCCAAATGGGTAAGGTAGTTGGTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.303

93.617

0.518
  pilC Legionella pneumophila strain ERS1305867

50

95.508

0.478
  pilC Acinetobacter baumannii D1279779

50.251

94.09

0.473
  pilC Acinetobacter baylyi ADP1

50.126

93.853

0.47
  pilC Vibrio cholerae strain A1552

48.622

94.326

0.459
  pilC Vibrio campbellii strain DS40M4

44.988

96.69

0.435
  pilG Neisseria meningitidis 44/76-A

41.542

95.035

0.395
  pilG Neisseria gonorrhoeae MS11

41.542

95.035

0.395