Detailed information NTG0659311

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MKD32_RS18855
• Genome accession: NZ_CP092630
• Coordinates: 4301555..4302481 (+)
• Length: 308 a.a.
• NCBI ID: WP_037426360.1
• Uniprot ID: -
• Organism: Shewanella xiamenensis strain CQ-Y1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4296555..4307481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKD32_RS20700	-	4297819..4298238 (+)	420	WP_275892054.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
MKD32_RS18845 (MKD32_18845)	pilB	4298321..4300030 (+)	1710	WP_172589290.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MKD32_RS18850 (MKD32_18850)	pilC	4300149..4301420 (+)	1272	WP_240292607.1	type II secretion system F family protein	Machinery gene
MKD32_RS18855 (MKD32_18855)	pilD	4301555..4302481 (+)	927	WP_037426360.1	A24 family peptidase	Machinery gene
MKD32_RS18860 (MKD32_18860)	coaE	4302622..4303239 (+)	618	WP_240292608.1	dephospho-CoA kinase	-
MKD32_RS18865 (MKD32_18865)	zapD	4303232..4303966 (+)	735	WP_037413632.1	cell division protein ZapD	-
MKD32_RS18870 (MKD32_18870)	yacG	4304048..4304257 (+)	210	WP_037413634.1	DNA gyrase inhibitor YacG	-
MKD32_RS18875 (MKD32_18875)	mutT	4304342..4304737 (+)	396	WP_140907787.1	8-oxo-dGTP diphosphatase MutT	-
MKD32_RS18880 (MKD32_18880)	-	4304881..4305417 (+)	537	WP_037426365.1	thioredoxin family protein	-
MKD32_RS18885 (MKD32_18885)	-	4305492..4306418 (-)	927	WP_037413637.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34439.02 Da
• Isoelectric Point: 7.6995

>NTDB_id=659311 MKD32_RS18855 WP_037426360.1 4301555..4302481(+) (pilD) [Shewanella xiamenensis strain CQ-Y1]
MTEFFTLLGHTFDQAPWLFICLSFVFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADIVKQVGIEKLNKPIDHY
PPKYNLVVPGSACPKCKTAIKPWHNLPILGWLMLRGKCAACHAPISSRYPIIELITGLLVATLAWHFGPSGQFIFAAILT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTNPTDAIIGAAVGYLSLWSIFWLFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGALVGITLIVTKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=659311 MKD32_RS18855 WP_037426360.1 4301555..4302481(+) (pilD) [Shewanella xiamenensis strain CQ-Y1]
ATGACTGAATTTTTCACTTTATTGGGTCACACTTTTGACCAAGCACCATGGCTTTTTATCTGCTTAAGTTTTGTGTTTGC
CGCTACTATTGGTAGTTTTTTAAATGTGGTTATTCATCGTTTTCCGGTGATGATGAAGCGCGAATGGCAACAGGAATGTA
ATCAGTATCTGCAGGAATATCATGCAGATATTGTTAAGCAAGTAGGAATAGAAAAGCTCAATAAACCGATCGATCACTAT
CCTCCCAAATACAATCTTGTGGTACCTGGCTCTGCCTGCCCTAAATGTAAAACCGCCATCAAGCCTTGGCATAATTTACC
CATTTTAGGTTGGTTAATGTTGAGGGGAAAATGCGCTGCCTGTCATGCCCCCATTTCCTCACGCTATCCGATTATTGAGC
TAATAACAGGGTTACTCGTTGCAACACTCGCCTGGCATTTTGGCCCCAGCGGGCAATTTATATTTGCTGCAATACTCACT
TTTGTGTTGATTGCGCTCACCGGAATCGATCTGGATGAAATGCTGCTTCCCGATCAAATGACCCTTCCCCTGCTATGGTT
AGGACTACTCATAAACCTCAACCATACCTTTACCAACCCAACCGATGCGATTATTGGTGCCGCAGTAGGCTATTTAAGTT
TATGGTCGATTTTTTGGCTATTTAAGCTGTTAACCGGTAAAGAAGGCATGGGCTATGGTGACTTTAAACTGCTTGCCGTA
TTTGGTGCTTGGCTTGGTTGGCAAATGTTGCCACTGGTGATTTTACTTTCATCCTTAGTGGGTGCCCTCGTAGGCATCAC
GCTGATCGTGACCAAACGTAATCAACTGGCAAATCCGATTCCCTTTGGTCCTTACATTGCCGCCGCAGGTTGGATCGCCC
TAATATGGGGTCAACCTATAGTGGATTGGTATTTAAGTACGTTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.365	96.104	0.503
pilD	Vibrio campbellii strain DS40M4	49.007	98.052	0.481
pilD	Acinetobacter nosocomialis M2	50	94.156	0.471
pilD	Acinetobacter baumannii D1279779	49.655	94.156	0.468
pilD	Neisseria gonorrhoeae MS11	45.329	93.831	0.425