Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG548_RS29145 Genome accession   NZ_CP108350
Coordinates   6566979..6567584 (+) Length   201 a.a.
NCBI ID   WP_186001018.1    Uniprot ID   A0A7T7RHN7
Organism   Streptomyces sp. NBC_01356     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6561979..6572584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG548_RS29115 (OG548_29105) - 6561982..6562434 (+) 453 WP_266462260.1 HD domain-containing protein -
  OG548_RS29120 (OG548_29110) - 6562450..6563679 (-) 1230 WP_329547600.1 acyltransferase family protein -
  OG548_RS29125 (OG548_29115) - 6564291..6564485 (+) 195 WP_266462266.1 hypothetical protein -
  OG548_RS29140 (OG548_29130) tig 6565155..6566540 (+) 1386 WP_329547601.1 trigger factor -
  OG548_RS29145 (OG548_29135) clpP 6566979..6567584 (+) 606 WP_186001018.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG548_RS29150 (OG548_29140) clpP 6567702..6568382 (+) 681 WP_266827428.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG548_RS29155 (OG548_29145) clpX 6568543..6569829 (+) 1287 WP_266827426.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG548_RS29160 (OG548_29150) - 6569897..6570874 (-) 978 WP_329547602.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21249.24 Da        Isoelectric Point: 4.7892

>NTDB_id=659045 OG548_RS29145 WP_186001018.1 6566979..6567584(+) (clpP) [Streptomyces sp. NBC_01356]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPEKDIYLYINSPGGSITAGMAIYDTMQYI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITRDSDRDRWFDPIEAKAYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=659045 OG548_RS29145 WP_186001018.1 6566979..6567584(+) (clpP) [Streptomyces sp. NBC_01356]
ATGCCCACAGCTGCCGGCGACCCTATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGTTGCTGCTCCTTGCCTCCGACCCGGAGA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACCGCGGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCGGCCGGCCTCGCCGGCTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCCTTCCACACCGGCCAGACCGTGGAGCAG
ATCACCCGCGACTCGGACCGGGACCGCTGGTTCGACCCGATCGAGGCCAAGGCGTACGGCCTCATCGACGACATCATGCC
CACCGCTGCCGGAATGCCTGGCGGTGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7RHN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.615

93.035

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

94.03

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

94.03

0.483
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.023

86.567

0.468
  clpP Streptococcus pyogenes MGAS315

53.179

86.07

0.458
  clpP Streptococcus pyogenes JRS4

53.179

86.07

0.458
  clpP Streptococcus thermophilus LMG 18311

51.445

86.07

0.443
  clpP Streptococcus thermophilus LMD-9

51.445

86.07

0.443
  clpP Streptococcus pneumoniae Rx1

50.867

86.07

0.438
  clpP Streptococcus pneumoniae D39

50.867

86.07

0.438
  clpP Streptococcus pneumoniae R6

50.867

86.07

0.438
  clpP Streptococcus pneumoniae TIGR4

50.867

86.07

0.438