Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA58_RS23780 Genome accession   NZ_CP108312
Coordinates   5273603..5274211 (+) Length   202 a.a.
NCBI ID   WP_356278867.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00009     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 5268603..5279211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA58_RS23745 (OHA58_23770) - 5268806..5268967 (+) 162 Protein_4686 ABC transporter permease -
  OHA58_RS23750 (OHA58_23775) - 5268978..5269424 (+) 447 WP_405481228.1 HD domain-containing protein -
  OHA58_RS23755 (OHA58_23780) - 5269506..5270654 (-) 1149 WP_405481229.1 acyltransferase family protein -
  OHA58_RS23760 (OHA58_23785) - 5271191..5271385 (+) 195 WP_100594330.1 hypothetical protein -
  OHA58_RS23775 (OHA58_23800) tig 5271924..5273318 (+) 1395 WP_389531966.1 trigger factor -
  OHA58_RS23780 (OHA58_23805) clpP 5273603..5274211 (+) 609 WP_356278867.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA58_RS23785 (OHA58_23810) clpP 5274265..5274924 (+) 660 WP_227294656.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA58_RS23790 (OHA58_23815) clpX 5275080..5276366 (+) 1287 WP_116512991.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA58_RS23795 (OHA58_23820) - 5276448..5277422 (-) 975 WP_405481231.1 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21277.08 Da        Isoelectric Point: 4.5407

>NTDB_id=658762 OHA58_RS23780 WP_356278867.1 5273603..5274211(+) (clpP) [Streptomyces sp. NBC_00009]
MPSAAGEPSLGGGLGDQVYSRLLNDRIIFLGQQVDDEIANKITAQMLLLAAADQDKDIYLYINSPGGSVTAGMAVYDTMQ
YIQNDVVTIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAGIGGTASDVKIQAEYLLRTKKRMAEITARHSGQTV
ETIIRDGDRDRWYTAEEAKAYGLIDEIISAATGVPGGGGTGA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=658762 OHA58_RS23780 WP_356278867.1 5273603..5274211(+) (clpP) [Streptomyces sp. NBC_00009]
ATGCCTTCTGCCGCCGGTGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGACTGCTCAACGACCGCAT
CATCTTCCTGGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACTGCCCAGATGCTCCTCCTGGCCGCTGCCGACC
AGGACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGTTCGGTGACGGCCGGCATGGCGGTCTACGACACCATGCAG
TACATCCAGAACGACGTCGTCACCATCGGCATGGGCATGGCCGCCTCCATGGGCCAGTTCCTGCTGACCGGCGGTACTCC
GGGCAAGCGCTTCGCGCTTCCGAACACGGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGTACGGCCTCGGACG
TCAAGATCCAGGCCGAGTACCTGCTGCGCACCAAGAAGCGCATGGCGGAGATCACCGCCCGGCACTCCGGGCAGACCGTC
GAGACGATCATCCGTGACGGTGACCGCGACCGCTGGTACACCGCCGAAGAGGCCAAGGCATACGGCCTCATCGACGAGAT
CATCAGTGCCGCTACGGGTGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.579

94.059

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.053

94.059

0.48
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.351

91.584

0.47
  clpP Bacillus subtilis subsp. subtilis str. 168

54.07

85.149

0.46
  clpP Streptococcus mutans UA159

53.757

85.644

0.46
  clpP Streptococcus pyogenes JRS4

52.874

86.139

0.455
  clpP Streptococcus pyogenes MGAS315

52.874

86.139

0.455
  clpP Streptococcus thermophilus LMD-9

51.724

86.139

0.446
  clpP Streptococcus thermophilus LMG 18311

51.724

86.139

0.446
  clpP Streptococcus pneumoniae Rx1

51.149

86.139

0.441
  clpP Streptococcus pneumoniae D39

51.149

86.139

0.441
  clpP Streptococcus pneumoniae R6

51.149

86.139

0.441
  clpP Streptococcus pneumoniae TIGR4

51.149

86.139

0.441