Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKM38_RS09350 Genome accession   NZ_CP092501
Coordinates   1938180..1939442 (-) Length   420 a.a.
NCBI ID   WP_071542667.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain VHProbi V38     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1933180..1944442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKM38_RS09335 (MKM38_09335) - 1934225..1935031 (-) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -
  MKM38_RS09340 (MKM38_09340) rny 1935156..1936715 (-) 1560 WP_003644638.1 ribonuclease Y -
  MKM38_RS09345 (MKM38_09345) recA 1936946..1938088 (-) 1143 WP_003641504.1 recombinase RecA Machinery gene
  MKM38_RS09350 (MKM38_09350) cinA 1938180..1939442 (-) 1263 WP_071542667.1 competence/damage-inducible protein A Machinery gene
  MKM38_RS09355 (MKM38_09355) pgsA 1939714..1940298 (-) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKM38_RS09360 (MKM38_09360) - 1940321..1941193 (-) 873 WP_003641501.1 RodZ domain-containing protein -
  MKM38_RS09365 (MKM38_09365) - 1941297..1942598 (-) 1302 WP_003644640.1 pitrilysin family protein -
  MKM38_RS09370 (MKM38_09370) - 1942595..1943875 (-) 1281 WP_015640633.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45178.30 Da        Isoelectric Point: 5.4407

>NTDB_id=658267 MKM38_RS09350 WP_071542667.1 1938180..1939442(-) (cinA) [Lactiplantibacillus plantarum strain VHProbi V38]
MQAEIIAVGTEILLGQITNTNSTYIARGLAELGIDSYYQTVVGDNRQRLSTVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAHYLNVALVEDQAAMQKITAWFATNDKVMTANNRLQALYPAGAQPLTNHNGMAVGAFYQSENSADFLLLPGPPRELAVM
FDSEAKLKLAAAYGEQAQIYSRVMRFYGISESELATRLQPLIDEQQAVTIAPYAKTNEVTLRLSAQAMTETAARGMIDKV
DHQIKATIGPYFYGYGDDNSLVTTVINQMIAAKLSITAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDAEGVVSEATAKAMASGAKQQLNTDVGISFTGVAGPGTLEGQPAGTVWIGLAYRDRPVKAKQYHFAGNRQQIRERS
VMAGLDLLRHALNEDTDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=658267 MKM38_RS09350 WP_071542667.1 1938180..1939442(-) (cinA) [Lactiplantibacillus plantarum strain VHProbi V38]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGTCAGATTACGAACACGAACAGTACGTACATCGCACG
TGGATTGGCCGAATTAGGAATTGATAGCTATTATCAAACGGTGGTTGGTGATAATCGGCAACGTTTGTCGACCGTCATTG
AAATTGCGGCCCAGCGGAATGACTTAGTTATTTTAACGGGTGGTTTGGGGCCGACCAAGGATGACTTGACGAAGCAGACG
CTCGCGCATTATTTGAATGTTGCCTTGGTTGAAGATCAGGCAGCAATGCAAAAAATTACGGCCTGGTTTGCCACTAATGA
CAAAGTAATGACGGCCAACAACCGATTACAGGCATTGTATCCGGCAGGCGCGCAACCGTTGACTAATCATAACGGAATGG
CTGTTGGTGCGTTTTATCAGTCAGAAAATAGTGCTGATTTCTTGTTATTGCCAGGTCCACCCCGTGAGTTAGCCGTAATG
TTTGATTCTGAGGCAAAACTGAAATTGGCAGCTGCATATGGGGAACAAGCCCAAATCTATTCGCGAGTGATGCGTTTTTA
TGGCATCAGTGAGTCTGAATTGGCGACCCGGTTGCAACCCTTGATTGATGAACAGCAGGCGGTTACGATTGCACCCTATG
CCAAGACTAACGAGGTTACCCTCAGATTAAGTGCCCAAGCTATGACGGAAACGGCTGCAAGGGGAATGATCGACAAAGTT
GATCACCAGATCAAGGCTACCATTGGGCCGTACTTTTACGGTTATGGAGACGATAACTCGTTAGTTACTACTGTTATTAA
TCAAATGATTGCGGCTAAGCTGAGTATTACAGCCGCTGAAAGCTTAACAGCTGGGCTGTTTCAGAGTACCATCGGCAGTG
TGTCCGGGGTCTCCGCAATCTTTCCGGGCGGCTTTGTAACGTATGCGAATGAGGCCAAACATCAGCTAGTGAACGTTCCA
CAAGCAATTATTGACGCTGAGGGCGTGGTTTCAGAAGCGACCGCTAAGGCCATGGCGAGTGGTGCTAAGCAGCAGCTAAA
TACTGATGTTGGTATCAGTTTTACAGGCGTTGCCGGTCCAGGAACCTTGGAAGGTCAACCGGCTGGAACGGTATGGATTG
GTCTTGCTTACCGTGATCGACCCGTGAAGGCCAAGCAGTACCATTTTGCTGGTAATCGACAACAAATTCGGGAACGCAGT
GTGATGGCCGGGTTAGACCTATTGAGACATGCATTGAATGAAGATACGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-411)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.113

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.877

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.877

100

0.483
  cinA Streptococcus pneumoniae R6

47.877

100

0.483
  cinA Streptococcus pneumoniae D39

47.642

100

0.481
  cinA Streptococcus mitis NCTC 12261

46.934

100

0.474
  cinA Streptococcus mutans UA159

47.47

98.81

0.469
  cinA Bacillus subtilis subsp. subtilis str. 168

44.068

98.333

0.433
  cinA Streptococcus suis isolate S10

39.904

99.048

0.395