Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKL87_RS10910 Genome accession   NZ_CP092498
Coordinates   2295905..2297146 (-) Length   413 a.a.
NCBI ID   WP_144182048.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain VHProbi OF10     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2290905..2302146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKL87_RS10895 (MKL87_10865) - 2292177..2292827 (+) 651 WP_003569527.1 YigZ family protein -
  MKL87_RS10900 (MKL87_10870) rny 2292921..2294492 (-) 1572 WP_003657913.1 ribonuclease Y -
  MKL87_RS10905 (MKL87_10875) recA 2294787..2295848 (-) 1062 WP_003587498.1 recombinase RecA Machinery gene
  MKL87_RS10910 (MKL87_10880) cinA 2295905..2297146 (-) 1242 WP_144182048.1 competence/damage-inducible protein A Machinery gene
  MKL87_RS10915 (MKL87_10885) pgsA 2297563..2298156 (-) 594 WP_003569518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKL87_RS10920 (MKL87_10890) - 2298153..2299082 (-) 930 WP_003569516.1 helix-turn-helix domain-containing protein -
  MKL87_RS10925 (MKL87_10895) - 2299169..2299897 (-) 729 WP_003569514.1 SDR family oxidoreductase -
  MKL87_RS10930 (MKL87_10900) - 2299897..2301189 (-) 1293 WP_003569512.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44267.62 Da        Isoelectric Point: 6.1814

>NTDB_id=658136 MKL87_RS10910 WP_144182048.1 2295905..2297146(-) (cinA) [Lacticaseibacillus paracasei strain VHProbi OF10]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGPRLEEAIKLVESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPAAMAKLQARAKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKEFVPMV
DHELLPRLAKWSGHAEVMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGANEKDADAKLEPMV
GAIMDRDGQYFYGYGDDNSLAKELVKTLAANDMQITAAESLTAGAFQAALGDVPGVSTYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=658136 MKL87_RS10910 WP_144182048.1 2295905..2297146(-) (cinA) [Lacticaseibacillus paracasei strain VHProbi OF10]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGTCCGCGACTTGAGGAGGCCATTA
AGTTGGTGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGCCGCTATGGCTAAATTACAGGCGCGCGCCAAGCAACAGCA
GCGGCCAATGACGCCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGCTTAG
CGGTTGGTGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCCAAGGAATTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCGGCCACGCGGAAGTTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTAACGAAAAAGACGCTGATGCAAAGTTAGAACCAATGGTC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGCTTGTGAAGAC
GCTTGCGGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCCGGCGCATTTCAAGCAGCGTTAGGCGATGTGC
CGGGGGTATCCACTTATTTTAAGGGAGGTTTTGTCACTTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGCGGTCGCAATGATGTTCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

51.415

100

0.528
  cinA Streptococcus mitis SK321

51.3

100

0.525
  cinA Streptococcus pneumoniae TIGR4

51.179

100

0.525
  cinA Streptococcus mutans UA159

51.932

100

0.521
  cinA Streptococcus pneumoniae Rx1

50.711

100

0.518
  cinA Streptococcus pneumoniae R6

50.711

100

0.518
  cinA Streptococcus pneumoniae D39

50.474

100

0.516
  cinA Bacillus subtilis subsp. subtilis str. 168

44.769

99.516

0.446
  cinA Streptococcus suis isolate S10

42.063

91.525

0.385