Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG438_RS30145 Genome accession   NZ_CP108291
Coordinates   6716072..6716677 (+) Length   201 a.a.
NCBI ID   WP_186001018.1    Uniprot ID   A0A7T7RHN7
Organism   Streptomyces sp. NBC_00035     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6711072..6721677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG438_RS30115 (OG438_30100) - 6711099..6711551 (+) 453 WP_405925604.1 HD domain-containing protein -
  OG438_RS30120 (OG438_30105) - 6711564..6712769 (-) 1206 WP_405925605.1 acyltransferase family protein -
  OG438_RS30125 (OG438_30110) - 6713381..6713575 (+) 195 WP_266462266.1 hypothetical protein -
  OG438_RS30140 (OG438_30125) tig 6714246..6715634 (+) 1389 WP_405925606.1 trigger factor -
  OG438_RS30145 (OG438_30130) clpP 6716072..6716677 (+) 606 WP_186001018.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG438_RS30150 (OG438_30135) clpP 6716795..6717475 (+) 681 WP_266827428.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG438_RS30155 (OG438_30140) clpX 6717636..6718922 (+) 1287 WP_326723115.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG438_RS30160 (OG438_30145) - 6719011..6719988 (-) 978 WP_326723116.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21249.24 Da        Isoelectric Point: 4.7892

>NTDB_id=658071 OG438_RS30145 WP_186001018.1 6716072..6716677(+) (clpP) [Streptomyces sp. NBC_00035]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPEKDIYLYINSPGGSITAGMAIYDTMQYI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITRDSDRDRWFDPIEAKAYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=658071 OG438_RS30145 WP_186001018.1 6716072..6716677(+) (clpP) [Streptomyces sp. NBC_00035]
ATGCCCACAGCTGCCGGCGACCCTATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGTTGCTGCTCCTTGCCTCCGACCCGGAGA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACCGCCGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCGGCCGGCCTCGCCGGCTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCCTTCCACACCGGCCAGACCGTGGAGCAG
ATCACCCGCGACTCGGACCGGGACCGCTGGTTCGACCCGATCGAGGCCAAGGCGTACGGCCTCATCGACGACATCATGCC
CACCGCTGCCGGAATGCCTGGCGGTGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7RHN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.615

93.035

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

94.03

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

94.03

0.483
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.023

86.567

0.468
  clpP Streptococcus pyogenes MGAS315

53.179

86.07

0.458
  clpP Streptococcus pyogenes JRS4

53.179

86.07

0.458
  clpP Streptococcus thermophilus LMG 18311

51.445

86.07

0.443
  clpP Streptococcus thermophilus LMD-9

51.445

86.07

0.443
  clpP Streptococcus pneumoniae Rx1

50.867

86.07

0.438
  clpP Streptococcus pneumoniae D39

50.867

86.07

0.438
  clpP Streptococcus pneumoniae R6

50.867

86.07

0.438
  clpP Streptococcus pneumoniae TIGR4

50.867

86.07

0.438