Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG374_RS16030 Genome accession   NZ_CP108287
Coordinates   3425405..3426073 (-) Length   222 a.a.
NCBI ID   WP_272934852.1    Uniprot ID   A0ABQ3TIA1
Organism   Streptomyces sp. NBC_00040     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3420405..3431073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG374_RS16020 (OG374_15895) - 3422963..3423895 (+) 933 WP_202201571.1 hypothetical protein -
  OG374_RS16025 (OG374_15900) clpX 3423965..3425251 (-) 1287 WP_202201570.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG374_RS16030 (OG374_15905) clpP 3425405..3426073 (-) 669 WP_272934852.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG374_RS16035 (OG374_15910) clpP 3426129..3426746 (-) 618 WP_030008567.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG374_RS16040 (OG374_15915) tig 3427023..3428411 (-) 1389 WP_202201569.1 trigger factor -
  OG374_RS16055 (OG374_15930) - 3428969..3429571 (-) 603 WP_252309253.1 hypothetical protein -
  OG374_RS16060 (OG374_15935) - 3429574..3429768 (-) 195 WP_030008564.1 membrane protein -
  OG374_RS16065 (OG374_15940) - 3429944..3430399 (-) 456 WP_202201567.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24389.73 Da        Isoelectric Point: 4.5793

>NTDB_id=657943 OG374_RS16030 WP_272934852.1 3425405..3426073(-) (clpP) [Streptomyces sp. NBC_00040]
MVNTQMQNNFSASGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDL
EIAANEILRMRDQLESMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIVSTRKSSAV

Nucleotide


Download         Length: 669 bp        

>NTDB_id=657943 OG374_RS16030 WP_272934852.1 3425405..3426073(-) (clpP) [Streptomyces sp. NBC_00040]
ATGGTGAACACCCAGATGCAGAACAACTTCTCCGCAAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTACGTCAT
CCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAAGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGAC
CGCGACATCTCCATCTACATCAACAGCCCCGGTGGCTCGTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGT
GAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGTACGCCCGGCA
AGCGCATGGCCCTGCCGAACGCCCGCGTGCTGATCCACCAGCCCTCCGGTGGCACCGGCCGTGAGCAGCTCTCCGACCTG
GAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGTCCATGCTGGCCAAGCACTCGACGACGCCGATCGA
GAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACCAGATCG
TCTCCACCCGTAAGAGCAGCGCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

85.586

0.455
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

84.685

0.423
  clpP Streptococcus thermophilus LMD-9

46.392

87.387

0.405
  clpP Streptococcus pyogenes JRS4

46.392

87.387

0.405
  clpP Streptococcus pyogenes MGAS315

46.392

87.387

0.405
  clpP Streptococcus thermophilus LMG 18311

46.392

87.387

0.405
  clpP Streptococcus mutans UA159

46.842

85.586

0.401
  clpP Streptococcus pneumoniae Rx1

46.073

86.036

0.396
  clpP Streptococcus pneumoniae D39

46.073

86.036

0.396
  clpP Streptococcus pneumoniae TIGR4

46.073

86.036

0.396
  clpP Streptococcus pneumoniae R6

46.073

86.036

0.396
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

86.036

0.392
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

86.036

0.383