Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG887_RS13870 Genome accession   NZ_CP108261
Coordinates   3114897..3115580 (-) Length   227 a.a.
NCBI ID   WP_124717721.1    Uniprot ID   A0ABW2X5X7
Organism   Streptomyces sp. NBC_00053     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3109897..3120580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG887_RS13860 (OG887_13875) - 3112380..3113372 (+) 993 WP_266789937.1 hypothetical protein -
  OG887_RS13865 (OG887_13880) clpX 3113441..3114739 (-) 1299 WP_072483632.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG887_RS13870 (OG887_13885) clpP 3114897..3115580 (-) 684 WP_124717721.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG887_RS13875 (OG887_13890) - 3115658..3116263 (-) 606 WP_164495234.1 ATP-dependent Clp protease proteolytic subunit -
  OG887_RS13880 (OG887_13895) tig 3116529..3117935 (-) 1407 WP_124717719.1 trigger factor -
  OG887_RS13895 (OG887_13910) - 3118591..3118785 (-) 195 WP_124717718.1 hypothetical protein -
  OG887_RS13900 (OG887_13915) - 3119288..3120442 (+) 1155 WP_124717717.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24752.12 Da        Isoelectric Point: 4.6747

>NTDB_id=657621 OG887_RS13870 WP_124717721.1 3114897..3115580(-) (clpP) [Streptomyces sp. NBC_00053]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPIDKIRDDIERDKILTAEDALAYGLVDQIVSTRKSAAGAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=657621 OG887_RS13870 WP_124717721.1 3114897..3115580(-) (clpP) [Streptomyces sp. NBC_00053]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTGCTGCTCGCCGCGGGTACGC
CCGGCAAGCGGATGGCGCTGCCCAACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCC
GATCGACAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCCCTCGCCTACGGTCTCGTCGACC
AGATCGTGTCGACCCGCAAGAGCGCGGCCGGAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.26

0.401
  clpP Streptococcus pyogenes MGAS315

44.845

85.463

0.383
  clpP Streptococcus pyogenes JRS4

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Streptococcus pneumoniae Rx1

43.75

84.581

0.37
  clpP Streptococcus pneumoniae D39

43.75

84.581

0.37
  clpP Streptococcus pneumoniae R6

43.75

84.581

0.37
  clpP Streptococcus pneumoniae TIGR4

43.75

84.581

0.37
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

84.141

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

84.141

0.366