Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LXM97_RS02440 Genome accession   NZ_CP092447
Coordinates   527744..528313 (+) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain SYN     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 522744..533313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM97_RS02415 (LXM97_02415) cysE 524231..524878 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  LXM97_RS02420 (LXM97_02420) cysS 524862..526262 (+) 1401 WP_000631977.1 cysteine--tRNA ligase -
  LXM97_RS02430 (LXM97_02430) rlmB 526255..527139 (+) 885 WP_275588098.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LXM97_RS02435 (LXM97_02435) - 527139..527663 (+) 525 WP_000664738.1 NYN domain-containing protein -
  LXM97_RS02440 (LXM97_02440) sigH 527744..528313 (+) 570 WP_000872872.1 RNA polymerase sigma factor Regulator
  LXM97_RS02445 (LXM97_02445) rpmG 528428..528571 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  LXM97_RS02450 (LXM97_02450) secE 528627..528809 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LXM97_RS02455 (LXM97_02455) nusG 528822..529370 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LXM97_RS02460 (LXM97_02460) rplK 529551..529973 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  LXM97_RS02465 (LXM97_02465) rplA 530181..530873 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  LXM97_RS02470 (LXM97_02470) rplJ 531145..531645 (+) 501 WP_239794943.1 50S ribosomal protein L10 -
  LXM97_RS02475 (LXM97_02475) rplL 531688..532056 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LXM97_RS02480 (LXM97_02480) - 532231..532839 (+) 609 WP_000020296.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=657620 LXM97_RS02440 WP_000872872.1 527744..528313(+) (sigH) [Staphylococcus aureus strain SYN]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=657620 LXM97_RS02440 WP_000872872.1 527744..528313(+) (sigH) [Staphylococcus aureus strain SYN]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979