Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG953_RS28915 Genome accession   NZ_CP108256
Coordinates   6150126..6150806 (+) Length   226 a.a.
NCBI ID   WP_327275258.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00057     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6145126..6155806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG953_RS28885 (OG953_28835) - 6145344..6146498 (-) 1155 WP_405687937.1 acyltransferase family protein -
  OG953_RS28890 (OG953_28840) - 6146978..6147172 (+) 195 WP_405687938.1 hypothetical protein -
  OG953_RS28905 (OG953_28855) tig 6147777..6149174 (+) 1398 WP_405687939.1 trigger factor -
  OG953_RS28910 (OG953_28860) - 6149439..6150044 (+) 606 WP_176729207.1 ATP-dependent Clp protease proteolytic subunit -
  OG953_RS28915 (OG953_28865) clpP 6150126..6150806 (+) 681 WP_327275258.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG953_RS28920 (OG953_28870) clpX 6150964..6152262 (+) 1299 WP_114244485.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG953_RS28925 (OG953_28875) - 6152333..6153388 (-) 1056 WP_405687941.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24822.25 Da        Isoelectric Point: 4.6747

>NTDB_id=657414 OG953_RS28915 WP_327275258.1 6150126..6150806(+) (clpP) [Streptomyces sp. NBC_00057]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPIDKIRDDIERDKILTAEDALAYGLVDQIVSTRKQAVTAV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=657414 OG953_RS28915 WP_327275258.1 6150126..6150806(+) (clpP) [Streptomyces sp. NBC_00057]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCGGGTACGC
CCGGCAAGCGGATGGCGCTGCCCAACGCCCGTGTACTGATCCACCAGCCGTCCTCGCAGACCGGCCGGGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAATGAGATCCTGCGGATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCC
GATCGACAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCCCTCGCCTACGGTCTCGTCGACC
AGATCGTGTCGACCCGCAAGCAGGCGGTCACAGCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

84.071

0.42
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.628

0.403
  clpP Streptococcus pyogenes MGAS315

44.845

85.841

0.385
  clpP Streptococcus pyogenes JRS4

44.845

85.841

0.385
  clpP Streptococcus thermophilus LMD-9

44.33

85.841

0.381
  clpP Streptococcus thermophilus LMG 18311

44.33

85.841

0.381
  clpP Streptococcus mutans UA159

45.263

84.071

0.381
  clpP Streptococcus pneumoniae Rx1

43.75

84.956

0.372
  clpP Streptococcus pneumoniae D39

43.75

84.956

0.372
  clpP Streptococcus pneumoniae R6

43.75

84.956

0.372
  clpP Streptococcus pneumoniae TIGR4

43.75

84.956

0.372
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

84.513

0.372
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

84.513

0.367