Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MJO57_RS25080 Genome accession   NZ_CP092417
Coordinates   5621094..5623118 (-) Length   674 a.a.
NCBI ID   WP_252019670.1    Uniprot ID   -
Organism   Endozoicomonas sp. SCSIO W0465     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5616094..5628118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO57_RS25070 (MJO57_24965) aroB 5619291..5620370 (-) 1080 WP_252019668.1 3-dehydroquinate synthase -
  MJO57_RS25075 (MJO57_24970) aroK 5620385..5620906 (-) 522 WP_252019669.1 shikimate kinase AroK -
  MJO57_RS25080 (MJO57_24975) pilQ 5621094..5623118 (-) 2025 WP_252019670.1 type IV pilus secretin PilQ Machinery gene
  MJO57_RS25085 (MJO57_24980) - 5623364..5623900 (-) 537 WP_252019673.1 pilus assembly protein PilP -
  MJO57_RS25090 (MJO57_24985) - 5623897..5624508 (-) 612 WP_252019674.1 type 4a pilus biogenesis protein PilO -
  MJO57_RS25095 (MJO57_24990) - 5624505..5625068 (-) 564 WP_252019677.1 PilN domain-containing protein -
  MJO57_RS25100 (MJO57_24995) comM 5625068..5626132 (-) 1065 WP_252019679.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 674 a.a.        Molecular weight: 73063.67 Da        Isoelectric Point: 4.3268

>NTDB_id=657301 MJO57_RS25080 WP_252019670.1 5621094..5623118(-) (pilQ) [Endozoicomonas sp. SCSIO W0465]
MNISPLLQARAVRGLLYTLLAVLPISAWGVVLKNMDAAALPGDMVELRLIFDGEAPVAHGYSIEKPPRISIDLPFTRSEL
PKYNEIGFNNAKSVTILEAGDRTRLVINLQQPTRFSSQSDGRTLSIYLGEDNSVAAVQRESAPESEPSDQAAEIKTGITD
IDFQRGDDGEGEVIIALSDDKIPMDMNEQGGRIRLEFQGDVLPKNLRNRLDVIDFATPVKFIDATVEDGNSIIVIEPKGE
FEYLAYQTDNLLTVSVKAPDPKDRGRRSAGLSYKGDKLSLNFQDIEVRAVLQLIADFTDLNLVASDTVGGNVTLRLQNVP
WDQALDIVLKAKGLDKRLEGNVLTVAPAAEIAAREREQLENEKQIRELAPVYTDLVQINYADAAEIATVLQGAEGASLLT
ERGSVQVVARTNSLLIKDTQAKLDELRELIDQLDIPIRQVMIEARIVTLSSNFKEDLGVKWAGSREDDNFSVGGGQDDNV
FTDLSVTGAGSSAIAIGFSTNGGTILNLELSALLSDGGGEVISQPKVITADKKTAVIKSGKEIPYEEKTSSGATSVAFKD
AVLGLEVTPQITPDGRVIMDIKINNDDTTDQASNNVPIISTNEITTQVLVEDGETVVLGGVFKQSKKQGITKVPVLGDIP
WVGGLFRNKTESDDKEELLVFITPRIVTEGVSLR

Nucleotide


Download         Length: 2025 bp        

>NTDB_id=657301 MJO57_RS25080 WP_252019670.1 5621094..5623118(-) (pilQ) [Endozoicomonas sp. SCSIO W0465]
ATGAATATTAGTCCCCTGTTGCAGGCCAGGGCTGTTCGAGGGCTTCTGTATACGTTGCTGGCCGTGTTGCCTATTTCCGC
GTGGGGTGTCGTCCTGAAAAATATGGATGCCGCTGCATTGCCGGGTGATATGGTTGAGCTACGTTTGATCTTTGATGGCG
AAGCGCCGGTTGCTCATGGCTACAGTATTGAGAAGCCTCCCAGGATTTCCATAGACTTGCCTTTTACCCGCAGTGAACTC
CCCAAGTATAATGAGATTGGTTTTAATAATGCCAAGAGCGTGACCATACTTGAGGCTGGTGACAGAACGCGTCTGGTCAT
TAATCTTCAGCAACCTACCCGCTTTAGTAGCCAGTCTGATGGCAGGACGCTCAGCATTTATCTTGGCGAGGATAACAGTG
TCGCTGCGGTACAAAGGGAGTCAGCCCCGGAGAGCGAACCGTCTGATCAAGCAGCTGAGATCAAAACAGGCATCACCGAT
ATTGATTTTCAGCGAGGTGATGATGGTGAAGGTGAGGTCATCATTGCCCTGTCCGATGACAAGATCCCAATGGATATGAA
TGAGCAGGGGGGGCGTATCCGTCTGGAGTTCCAGGGTGATGTATTGCCAAAGAATTTGAGAAACCGCCTGGATGTTATCG
ATTTTGCAACACCGGTTAAGTTTATTGATGCAACTGTTGAGGATGGTAACAGCATTATTGTTATCGAGCCCAAGGGGGAG
TTTGAGTATCTGGCCTATCAGACAGACAATCTGTTAACGGTCAGTGTCAAGGCTCCAGACCCTAAAGATCGCGGTAGAAG
AAGTGCAGGGCTTTCCTATAAAGGTGACAAACTGTCGTTAAACTTTCAGGATATAGAAGTCCGGGCCGTACTTCAGTTAA
TCGCTGATTTTACCGATCTGAACCTGGTTGCGTCGGATACCGTTGGGGGCAATGTTACCCTGCGGTTACAGAATGTTCCC
TGGGATCAGGCACTTGATATTGTGCTTAAGGCCAAAGGGCTCGATAAGCGACTGGAAGGTAATGTTCTCACCGTGGCCCC
GGCTGCGGAAATTGCAGCACGTGAGCGTGAGCAGCTGGAAAACGAAAAACAGATTCGTGAATTAGCCCCGGTATATACCG
ATCTGGTTCAGATTAATTACGCTGACGCTGCAGAAATTGCCACGGTCTTGCAGGGAGCAGAAGGTGCCAGTCTGCTGACA
GAAAGAGGCTCGGTTCAGGTGGTTGCAAGAACCAATAGTCTGTTGATCAAGGATACTCAGGCCAAGCTGGATGAATTGAG
AGAGCTGATTGATCAACTGGATATTCCCATTCGTCAGGTTATGATTGAAGCTCGTATCGTGACGCTCAGCTCCAATTTCA
AAGAAGATCTTGGGGTCAAATGGGCTGGCTCAAGAGAAGATGACAACTTTTCTGTTGGTGGTGGTCAGGATGATAATGTT
TTCACTGACCTGAGTGTAACCGGAGCGGGTTCAAGTGCTATTGCCATTGGCTTTTCCACCAATGGAGGCACCATTTTGAA
CCTTGAGCTTTCTGCCCTGTTGAGTGATGGCGGCGGTGAAGTAATTTCACAACCAAAAGTCATTACAGCAGATAAGAAAA
CGGCGGTGATCAAATCAGGTAAAGAAATCCCGTACGAAGAGAAAACTTCCAGTGGAGCTACTTCTGTGGCGTTCAAGGAT
GCAGTGCTGGGACTGGAGGTGACACCACAGATTACCCCGGATGGTCGGGTCATTATGGATATCAAAATCAATAATGACGA
TACCACCGATCAGGCATCCAATAATGTACCTATTATTTCGACCAATGAAATCACTACTCAGGTGCTGGTTGAAGATGGTG
AAACCGTTGTACTAGGTGGTGTCTTCAAGCAGAGCAAGAAACAAGGTATTACTAAAGTACCTGTGTTGGGAGATATTCCC
TGGGTTGGTGGCTTGTTCCGCAATAAAACAGAAAGTGATGATAAAGAAGAACTACTGGTCTTTATTACCCCAAGAATCGT
TACTGAAGGTGTTTCATTGCGTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(375-439)

Bacterial type II and III secretion system protein (Secretin)

(513-667)

Secretin and TonB N terminus short domain (STN)

(301-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

50.365

100

0.512
  pilQ Acinetobacter baumannii strain A118

40.169

100

0.424
  pilQ Acinetobacter baumannii D1279779

40.169

100

0.424
  comQ Acinetobacter baylyi ADP1

40.486

100

0.42
  pilQ Legionella pneumophila strain Lp02

40.991

98.813

0.405
  pilQ Legionella pneumophila strain ERS1305867

40.691

98.813

0.402
  pilQ Neisseria gonorrhoeae strain FA1090

33.516

100

0.362