NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OHU33_RS31120	Genome accession	NZ_CP108237
Coordinates	6707155..6707775 (+)	Length	206 a.a.
NCBI ID	WP_323178394.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00079
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 6702155..6712775

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHU33_RS31080 (OHU33_30970)	-	6702156..6702350 (+)	195	WP_016435177.1	hypothetical protein	-
OHU33_RS31085 (OHU33_30975)	-	6702533..6702724 (+)	192	WP_266514330.1	hypothetical protein	-
OHU33_RS31090	-	6702892..6703158 (-)	267	Protein_6151	DUF6083 domain-containing protein	-
OHU33_RS31095 (OHU33_30980)	-	6703222..6704619 (-)	1398	WP_266514327.1	hypothetical protein	-
OHU33_RS31100 (OHU33_30985)	-	6704646..6704858 (+)	213	Protein_6153	cation transporter	-
OHU33_RS31115 (OHU33_31000)	tig	6705477..6706874 (+)	1398	WP_266514325.1	trigger factor	-
OHU33_RS31120 (OHU33_31005)	clpP	6707155..6707775 (+)	621	WP_323178394.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU33_RS31125 (OHU33_31010)	clpP	6707825..6708505 (+)	681	WP_323178393.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU33_RS31130 (OHU33_31015)	clpX	6708684..6709973 (+)	1290	WP_266514322.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHU33_RS31135 (OHU33_31020)	-	6710217..6711179 (-)	963	WP_266514319.1	hypothetical protein	-

Sequence

Protein

Download Length: 206 a.a. Molecular weight: 21823.73 Da Isoelectric Point: 4.5852

                                >NTDB_id=656954 OHU33_RS31120 WP_323178394.1 6707155..6707775(+) (clpP) [Streptomyces sp. NBC_00079]

MTNLMPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIY

DTMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAQHT

GQSFEQVTRDSDRDRWFDPEEAKEYGLIDDVITAAANMPGGGGTGA

Nucleotide

Download Length: 621 bp

                                >NTDB_id=656954 OHU33_RS31120 WP_323178394.1 6707155..6707775(+) (clpP) [Streptomyces sp. NBC_00079]

GTGACGAATCTGATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCT

CAACGAGCGGATCATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGTTGCTGCTCCTTG

CCGCTGCGGACCCCGACAAGGACATCAACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGTATGGCGATCTAC

GACACCATGCAGTTCATCAAGAACGACGTGGTGACGATCGCGATGGGCCTCGCCGCCTCGATGGGCCAGTTCCTGCTCAG

CGCGGGCACCCCCGGCAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTGGCTGGTT

CGGCCTCCGACATCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCGGAGCTCACCGCCCAGCACACC

GGTCAGTCGTTCGAGCAGGTCACCCGCGACTCCGACCGCGACCGCTGGTTCGACCCCGAGGAGGCCAAGGAGTACGGCCT

CATCGACGACGTCATCACAGCGGCCGCCAACATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-193)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	56.021	92.718	0.519
clpP	Lactococcus lactis subsp. cremoris KW2	52.062	94.175	0.49
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.546	94.175	0.485
clpP	Streptococcus mutans UA159	50	93.204	0.466
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.747	88.35	0.466
clpP	Streptococcus pyogenes MGAS315	49.215	92.718	0.456
clpP	Streptococcus pyogenes JRS4	49.215	92.718	0.456
clpP	Streptococcus thermophilus LMG 18311	52.299	84.466	0.442
clpP	Streptococcus thermophilus LMD-9	52.299	84.466	0.442
clpP	Streptococcus pneumoniae Rx1	52.023	83.981	0.437
clpP	Streptococcus pneumoniae D39	52.023	83.981	0.437
clpP	Streptococcus pneumoniae R6	52.023	83.981	0.437
clpP	Streptococcus pneumoniae TIGR4	52.023	83.981	0.437

Detailed information NTG0656954