Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG786_RS20580 Genome accession   NZ_CP108217
Coordinates   4802814..4803497 (+) Length   227 a.a.
NCBI ID   WP_275494202.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00101     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4797814..4808497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG786_RS20555 (OG786_20570) - 4799461..4799655 (+) 195 WP_266704317.1 hypothetical protein -
  OG786_RS20570 (OG786_20585) tig 4800383..4801774 (+) 1392 WP_405459619.1 trigger factor -
  OG786_RS20575 (OG786_20590) - 4802119..4802724 (+) 606 WP_275496154.1 ATP-dependent Clp protease proteolytic subunit -
  OG786_RS20580 (OG786_20595) clpP 4802814..4803497 (+) 684 WP_275494202.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG786_RS20585 (OG786_20600) clpX 4803655..4804953 (+) 1299 WP_275494203.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG786_RS20590 (OG786_20605) - 4805557..4806561 (-) 1005 WP_405459620.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24853.28 Da        Isoelectric Point: 4.7842

>NTDB_id=656541 OG786_RS20580 WP_275494202.1 4802814..4803497(+) (clpP) [Streptomyces sp. NBC_00101]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLMCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEQMLAKHSTTPLEKISEDIERDKILTAEEALAYGLVDQIVSTRKTSAGSAV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=656541 OG786_RS20580 WP_275494202.1 4802814..4803497(+) (clpP) [Streptomyces sp. NBC_00101]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCA
TCATCTTCCTCGGCGTGCAGATCGACGACGCCTCGGCCAACGACGTGATGGCGCAGCTGATGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTGGCCGCCGGCACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGCGTCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGGACCCAGCTGGAGCAGATGCTGGCCAAGCACTCGACCACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGTGACAAGATCCTGACCGCCGAGGAAGCCCTGGCGTACGGTCTGGTGGACC
AGATCGTCTCCACCCGTAAGACCTCGGCCGGATCCGCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

83.7

0.427
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.26

0.401
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

84.141

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

84.141

0.379
  clpP Streptococcus mutans UA159

44.737

83.7

0.374
  clpP Streptococcus pneumoniae Rx1

44.041

85.022

0.374
  clpP Streptococcus pneumoniae D39

44.041

85.022

0.374
  clpP Streptococcus pneumoniae R6

44.041

85.022

0.374
  clpP Streptococcus pneumoniae TIGR4

44.041

85.022

0.374