Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG454_RS16860 Genome accession   NZ_CP108213
Coordinates   3572408..3573073 (-) Length   221 a.a.
NCBI ID   WP_150257432.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00105     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3567408..3578073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG454_RS16850 (OG454_16815) - 3569951..3570898 (+) 948 WP_401602008.1 hypothetical protein -
  OG454_RS16855 (OG454_16820) clpX 3570968..3572254 (-) 1287 WP_301371147.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG454_RS16860 (OG454_16825) clpP 3572408..3573073 (-) 666 WP_150257432.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG454_RS16865 (OG454_16830) - 3573128..3573745 (-) 618 WP_030649990.1 ATP-dependent Clp protease proteolytic subunit -
  OG454_RS16870 (OG454_16835) tig 3574022..3575416 (-) 1395 WP_401602011.1 trigger factor -
  OG454_RS16885 (OG454_16850) - 3576016..3576552 (+) 537 WP_405830116.1 hypothetical protein -
  OG454_RS16890 (OG454_16855) - 3576595..3576789 (-) 195 WP_030008564.1 membrane protein -
  OG454_RS16895 (OG454_16860) - 3576965..3577420 (-) 456 WP_405830118.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24397.71 Da        Isoelectric Point: 4.6747

>NTDB_id=656364 OG454_RS16860 WP_150257432.1 3572408..3573073(-) (clpP) [Streptomyces sp. NBC_00105]
MVNTQMQNNFSASGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDL
EIAANEILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=656364 OG454_RS16860 WP_150257432.1 3572408..3573073(-) (clpP) [Streptomyces sp. NBC_00105]
ATGGTGAACACCCAGATGCAGAACAACTTCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTACGTCAT
CCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGAC
CGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGT
GAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCAGCGGTCCTGCTCGCCGCCGGCACCCCCGGCA
AGCGCATGGCCCTGCCGAACGCCCGCGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGTGAGCAGCTCTCGGACCTC
GAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGACCATGCTGGCCAAGCACTCCACGACGCCGATCGA
GAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACCAGATCG
TCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

85.973

0.457
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

85.068

0.425
  clpP Streptococcus thermophilus LMD-9

46.392

87.783

0.407
  clpP Streptococcus thermophilus LMG 18311

46.392

87.783

0.407
  clpP Streptococcus pyogenes MGAS315

47.368

85.973

0.407
  clpP Streptococcus pyogenes JRS4

47.368

85.973

0.407
  clpP Streptococcus mutans UA159

46.842

85.973

0.403
  clpP Streptococcus pneumoniae Rx1

46.073

86.425

0.398
  clpP Streptococcus pneumoniae D39

46.073

86.425

0.398
  clpP Streptococcus pneumoniae TIGR4

46.073

86.425

0.398
  clpP Streptococcus pneumoniae R6

46.073

86.425

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

86.425

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

86.425

0.385