Detailed information NTG0656363

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG454_RS16855
• Genome accession: NZ_CP108213
• Coordinates: 3570968..3572254 (-)
• Length: 428 a.a.
• NCBI ID: WP_301371147.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00105
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3565968..3577254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG454_RS16845 (OG454_16810)	-	3567190..3569811 (-)	2622	WP_405830113.1	valine--tRNA ligase	-
OG454_RS16850 (OG454_16815)	-	3569951..3570898 (+)	948	WP_401602008.1	hypothetical protein	-
OG454_RS16855 (OG454_16820)	clpX	3570968..3572254 (-)	1287	WP_301371147.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG454_RS16860 (OG454_16825)	clpP	3572408..3573073 (-)	666	WP_150257432.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG454_RS16865 (OG454_16830)	-	3573128..3573745 (-)	618	WP_030649990.1	ATP-dependent Clp protease proteolytic subunit	-
OG454_RS16870 (OG454_16835)	tig	3574022..3575416 (-)	1395	WP_401602011.1	trigger factor	-
OG454_RS16885 (OG454_16850)	-	3576016..3576552 (+)	537	WP_405830116.1	hypothetical protein	-
OG454_RS16890 (OG454_16855)	-	3576595..3576789 (-)	195	WP_030008564.1	membrane protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46948.84 Da
• Isoelectric Point: 4.7751

>NTDB_id=656363 OG454_RS16855 WP_301371147.1 3570968..3572254(-) (clpX) [Streptomyces sp. NBC_00105]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVRSNVNPTLVPRIVPKDQGPHEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=656363 OG454_RS16855 WP_301371147.1 3570968..3572254(-) (clpX) [Streptomyces sp. NBC_00105]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAAGAGCTCGCGGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCCCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCCCTCTCGGTAGCGGTCTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
GGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGCCCCACCGGCTCGGGCAAGACGCTGCTCGCGCAGA
CCCTGGCCCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTGGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTCTCGGGTGAAGGCGTCCAGCAGGCCC
TCCTGAAGATCCTGGAAGGCACGACCGCCTCCGTCCCGCCGCAGGGCGGCCGGAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGTGCGGGAGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCCAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTGCTGACCTCCGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTGATCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGGCTGTTCGAACTCGACGGTGT
CGAGCTGGACTTCGAGCGCGAGGCCCTCGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACGGGCGCGCGCGGCCTGC
GCGCCATCATGGAAGAGGTCCTCATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTGGTCATCACC
TCGGACGTGGTCCGCTCCAACGTCAACCCGACGCTGGTCCCGAGGATCGTCCCGAAGGACCAGGGCCCGCACGAGAAGTC
CGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.93	93.925	0.6
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.771	96.028	0.516