Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OXB_RS10740 Genome accession   NZ_AP013294
Coordinates   2198421..2199680 (+) Length   419 a.a.
NCBI ID   WP_041074186.1    Uniprot ID   A0A0A8JJN5
Organism   Bacillus sp. OxB-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2193421..2204680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXB_RS10715 (OXB_2111) - 2193929..2195227 (+) 1299 WP_041074176.1 pitrilysin family protein -
  OXB_RS10720 (OXB_2112) - 2195224..2195955 (+) 732 WP_041074178.1 SDR family oxidoreductase -
  OXB_RS10725 (OXB_2113) - 2196064..2196864 (+) 801 WP_041074180.1 DUF3388 domain-containing protein -
  OXB_RS10730 (OXB_2114) - 2196883..2197761 (+) 879 WP_144399684.1 helix-turn-helix domain-containing protein -
  OXB_RS10735 (OXB_2115) pgsA 2197824..2198402 (+) 579 WP_041074184.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OXB_RS10740 (OXB_2116) cinA 2198421..2199680 (+) 1260 WP_041074186.1 competence/damage-inducible protein A Machinery gene
  OXB_RS10745 (OXB_2117) recA 2199846..2200910 (+) 1065 WP_041074188.1 recombinase RecA Machinery gene
  OXB_RS10750 (OXB_2118) rny 2201238..2202794 (+) 1557 WP_041074191.1 ribonuclease Y -
  OXB_RS10755 (OXB_2119) - 2202856..2203653 (+) 798 WP_041076639.1 TIGR00282 family metallophosphoesterase -
  OXB_RS10760 (OXB_2120) - 2203741..2204007 (+) 267 WP_144399685.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45511.04 Da        Isoelectric Point: 4.7712

>NTDB_id=65594 OXB_RS10740 WP_041074186.1 2198421..2199680(+) (cinA) [Bacillus sp. OxB-1]
MKAEIIAVGSELLLGQITNTNAQFISEKLAEIGIDVHFQTVVGDNPDRLNEVIEIAKKRADVLIFTGGLGPTKDDMTKET
IVKQIESTLVSDEEALFSIQQYFERSGRVMTENNKKQALVFKDAIVLPNRNGMAPGMAVEKDGVQYILLPGPPHEMKPMF
TGFAIPYLLGVTGRKEVISSRVLKFYGIGEAELEHRIQPILDRQSNPTIAPLASADGVTLRITAKAETLDDANKLIAPVE
GEIRAIVGEFVYGVDDDTLSSKAAEMLFQNGWTLSAAESLTSGLFMAELGKEAGIGVSLEGGVVVYNEQQKVEQLEVEQE
LLDQFGIVSSECAAALAVNVKRKFGSNIGVGLTGAAGPEPHDGAPVGTVWIGIVSDDAEMETYKLSLSGSRNANRRRAAQ
FAIYYLIKHMEKKEAKKHF

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=65594 OXB_RS10740 WP_041074186.1 2198421..2199680(+) (cinA) [Bacillus sp. OxB-1]
ATGAAGGCGGAAATTATTGCGGTAGGCTCGGAATTATTGCTTGGCCAAATCACTAATACGAATGCACAGTTCATTTCGGA
GAAGCTTGCGGAGATTGGAATTGATGTCCATTTCCAAACGGTTGTCGGAGATAACCCCGACCGCTTGAATGAAGTGATCG
AAATTGCAAAAAAACGGGCGGATGTCCTCATTTTCACCGGGGGACTTGGACCGACAAAAGACGATATGACGAAAGAGACC
ATCGTAAAGCAGATCGAGTCGACGTTGGTCAGTGACGAAGAGGCCCTGTTTTCGATACAGCAGTATTTCGAGCGGAGCGG
GCGGGTAATGACGGAAAACAATAAGAAGCAGGCATTGGTGTTCAAAGATGCGATTGTCCTGCCGAACCGCAACGGCATGG
CGCCTGGGATGGCGGTTGAAAAAGACGGCGTCCAATACATTTTACTGCCGGGGCCTCCCCATGAGATGAAGCCGATGTTC
ACCGGTTTTGCGATTCCCTACTTGCTTGGCGTGACGGGAAGGAAGGAGGTCATCTCCTCCCGCGTATTGAAATTTTATGG
GATCGGCGAAGCGGAGCTGGAGCATCGCATTCAGCCGATTCTGGACAGGCAGTCCAATCCGACGATCGCCCCCCTGGCAT
CGGCCGACGGTGTAACCTTGCGGATTACGGCGAAAGCCGAAACTTTGGATGACGCAAACAAACTGATCGCCCCTGTAGAA
GGGGAAATCCGTGCGATTGTCGGGGAATTTGTTTACGGCGTCGACGATGATACGCTTTCTTCCAAGGCTGCGGAAATGCT
CTTTCAGAATGGTTGGACGCTGTCCGCGGCGGAGAGCCTGACATCCGGCCTGTTCATGGCGGAGCTCGGGAAAGAGGCGG
GTATCGGCGTTTCTTTGGAAGGTGGGGTTGTCGTCTACAACGAACAGCAAAAAGTCGAACAGCTCGAGGTGGAACAAGAG
TTATTGGATCAGTTCGGTATCGTCAGTTCGGAATGCGCCGCTGCCCTTGCTGTGAATGTGAAACGTAAATTTGGATCGAA
TATAGGGGTCGGCCTGACAGGTGCTGCAGGTCCGGAACCGCATGACGGCGCGCCCGTCGGCACTGTATGGATCGGCATCG
TATCCGATGATGCGGAAATGGAAACGTATAAATTATCCCTTTCCGGTTCCCGGAATGCGAACCGTCGACGTGCTGCCCAA
TTTGCAATCTATTACTTAATTAAGCATATGGAGAAAAAAGAAGCCAAAAAACATTTTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8JJN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50

98.329

0.492
  cinA Streptococcus pneumoniae TIGR4

43.165

99.523

0.43
  cinA Streptococcus pneumoniae Rx1

43.165

99.523

0.43
  cinA Streptococcus pneumoniae R6

43.165

99.523

0.43
  cinA Streptococcus pneumoniae D39

42.926

99.523

0.427
  cinA Streptococcus mitis NCTC 12261

42.206

99.523

0.42
  cinA Streptococcus mitis SK321

41.727

99.523

0.415
  cinA Streptococcus mutans UA159

39.952

98.568

0.394

Multiple sequence alignment