Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG830_RS13640 Genome accession   NZ_CP108194
Coordinates   3006728..3007411 (-) Length   227 a.a.
NCBI ID   WP_030921266.1    Uniprot ID   A0ABV2UCE3
Organism   Streptomyces sp. NBC_00121     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3001728..3012411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG830_RS13630 (OG830_13680) - 3004191..3005204 (+) 1014 WP_326744365.1 hypothetical protein -
  OG830_RS13635 (OG830_13685) clpX 3005272..3006570 (-) 1299 WP_030970081.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG830_RS13640 (OG830_13690) clpP 3006728..3007411 (-) 684 WP_030921266.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG830_RS13645 (OG830_13695) - 3007459..3008064 (-) 606 WP_018551584.1 ATP-dependent Clp protease proteolytic subunit -
  OG830_RS13650 (OG830_13700) tig 3008329..3009717 (-) 1389 WP_313937268.1 trigger factor -
  OG830_RS13665 (OG830_13715) - 3010253..3010447 (-) 195 WP_030921275.1 hypothetical protein -
  OG830_RS13670 (OG830_13720) - 3010927..3012081 (+) 1155 WP_313937269.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24826.26 Da        Isoelectric Point: 4.6814

>NTDB_id=655860 OG830_RS13640 WP_030921266.1 3006728..3007411(-) (clpP) [Streptomyces sp. NBC_00121]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKIRDDIERDKILTAEDALAYGLVDQIVSTRKSAAGAMA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=655860 OG830_RS13640 WP_030921266.1 3006728..3007411(-) (clpP) [Streptomyces sp. NBC_00121]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGTCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAAGAGCGCG
TGATCTTCCTCGGCGTCCAAATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACGGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCAGCCTCCGCCGCGGCCGTGCTGCTCGCAGCCGGTACGC
CCGGCAAGCGCATGGCACTGCCCAACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACGGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCC
GCTGGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCCCTCGCCTACGGTCTCGTCGACC
AGATCGTCTCCACCCGCAAGAGCGCGGCCGGAGCGATGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

83.7

0.427
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.26

0.401
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

84.141

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.141

0.374
  clpP Streptococcus pneumoniae R6

44.271

84.581

0.374
  clpP Streptococcus pneumoniae TIGR4

44.271

84.581

0.374
  clpP Streptococcus pneumoniae D39

44.271

84.581

0.374
  clpP Streptococcus pneumoniae Rx1

44.271

84.581

0.374
  clpP Streptococcus mutans UA159

44.737

83.7

0.374