NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG737_RS09265	Genome accession	NZ_CP108191
Coordinates	1957869..1958540 (-)	Length	223 a.a.
NCBI ID	WP_328925722.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00122
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1952869..1963540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG737_RS09245 (OG737_09215)	-	1954212..1954913 (+)	702	WP_405921398.1	hypothetical protein	-
OG737_RS09250 (OG737_09220)	-	1955020..1955931 (+)	912	WP_328925719.1	hypothetical protein	-
OG737_RS09255 (OG737_09225)	-	1955987..1956259 (-)	273	WP_328925720.1	hypothetical protein	-
OG737_RS09260 (OG737_09230)	clpX	1956429..1957715 (-)	1287	WP_328925721.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG737_RS09265 (OG737_09235)	clpP	1957869..1958540 (-)	672	WP_328925722.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG737_RS09270 (OG737_09240)	clpP	1958608..1959225 (-)	618	WP_328925723.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG737_RS09275 (OG737_09245)	tig	1959502..1960890 (-)	1389	WP_328925724.1	trigger factor	-
OG737_RS09290 (OG737_09260)	-	1961469..1963043 (-)	1575	WP_405921399.1	FAD-binding oxidoreductase	-
OG737_RS09295 (OG737_09265)	-	1963366..1963497 (-)	132	WP_328925726.1	hypothetical protein	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 24506.90 Da Isoelectric Point: 4.7847

                                >NTDB_id=655776 OG737_RS09265 WP_328925722.1 1957869..1958540(-) (clpP) [Streptomyces sp. NBC_00122]

MVNTQMHMNNLSPASGLYTGAQVDNRYVIPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMD

PDRDISIYINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLS

DLEIAANEILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQVVSTRKSSH

Nucleotide

Download Length: 672 bp

                                >NTDB_id=655776 OG737_RS09265 WP_328925722.1 1957869..1958540(-) (clpP) [Streptomyces sp. NBC_00122]

ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCTCAGGTGGACAACCGCTA

CGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCA

TCATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC

CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCA

GTTCGTGAAGCCGGACATCTCGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGCACCC

CCGGCAAGCGCATGGCCCTGCCGAACGCCCGTGTGCTGATCCACCAGCCCTCCGGCGGCACCGGCCGCGAGCAGCTCTCC

GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACGACGCC

GATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATTCTCACTGCGGAGGACGCTCTCGCGTACGGCCTGATCGACC

AGGTCGTTTCCACCCGCAAGAGCTCGCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	53.684	85.202	0.457
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.064	84.305	0.43
clpP	Streptococcus thermophilus LMD-9	45.876	86.996	0.399
clpP	Streptococcus pyogenes JRS4	45.876	86.996	0.399
clpP	Streptococcus pyogenes MGAS315	45.876	86.996	0.399
clpP	Streptococcus thermophilus LMG 18311	45.876	86.996	0.399
clpP	Streptococcus mutans UA159	46.316	85.202	0.395
clpP	Streptococcus pneumoniae Rx1	45.55	85.65	0.39
clpP	Streptococcus pneumoniae D39	45.55	85.65	0.39
clpP	Streptococcus pneumoniae TIGR4	45.55	85.65	0.39
clpP	Streptococcus pneumoniae R6	45.55	85.65	0.39
clpP	Lactococcus lactis subsp. cremoris KW2	45.026	85.65	0.386
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	43.979	85.65	0.377

Detailed information NTG0655776