Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG427_RS25525 Genome accession   NZ_CP108183
Coordinates   5627991..5628665 (+) Length   224 a.a.
NCBI ID   WP_360880933.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00133     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5622991..5633665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG427_RS25495 (OG427_25450) - 5623254..5624420 (-) 1167 WP_405808291.1 acyltransferase family protein -
  OG427_RS25500 (OG427_25455) - 5624843..5625037 (+) 195 WP_313946321.1 hypothetical protein -
  OG427_RS25515 (OG427_25470) tig 5625688..5627091 (+) 1404 WP_360880931.1 trigger factor -
  OG427_RS25520 (OG427_25475) - 5627344..5627949 (+) 606 WP_360881024.1 ATP-dependent Clp protease proteolytic subunit -
  OG427_RS25525 (OG427_25480) clpP 5627991..5628665 (+) 675 WP_360880933.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG427_RS25530 (OG427_25485) clpX 5628811..5630103 (+) 1293 WP_360880935.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG427_RS25535 (OG427_25490) - 5630168..5631106 (-) 939 WP_405890670.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24543.90 Da        Isoelectric Point: 4.6814

>NTDB_id=655731 OG427_RS25525 WP_360880933.1 5627991..5628665(+) (clpP) [Streptomyces sp. NBC_00133]
MVNTHMSNFSASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDR
DISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSDLE
IAANEILRMRTQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKSTAAAAA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=655731 OG427_RS25525 WP_360880933.1 5627991..5628665(+) (clpP) [Streptomyces sp. NBC_00133]
ATGGTGAACACCCATATGAGTAACTTCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTACGTCGTCCC
GCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCC
TCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGC
GACATCTCCATCTACATCAACAGCCCCGGCGGCTCGTTCACGGCCCTGACGGCCATCTACGACACGATGCAGTTCGTGAA
GCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCTTCTGCCGCGGCCGTGCTGCTCGCCGCCGGCACCCCCGGCAAGC
GGATGGCCCTGCCGAACGCCCGCGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGGGAGCAGCTCTCCGACCTGGAG
ATCGCGGCCAACGAGATCCTGCGCATGCGCACCCAGCTCGAGGAGATGCTGGCCAAGCACTCCACGACGCCGATCGAGAA
GATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCGCTTGCGTACGGCCTCGTCGACCAGATCGTCT
CGACCCGTAAGAGCACCGCAGCAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(35-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

84.821

0.429
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.404

83.929

0.406
  clpP Streptococcus thermophilus LMD-9

44.845

86.607

0.388
  clpP Streptococcus pyogenes JRS4

44.845

86.607

0.388
  clpP Streptococcus pyogenes MGAS315

44.845

86.607

0.388
  clpP Streptococcus thermophilus LMG 18311

44.845

86.607

0.388
  clpP Streptococcus mutans UA159

45.263

84.821

0.384
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

85.268

0.379
  clpP Streptococcus pneumoniae R6

44.041

86.161

0.379
  clpP Streptococcus pneumoniae TIGR4

44.041

86.161

0.379
  clpP Streptococcus pneumoniae D39

44.041

86.161

0.379
  clpP Streptococcus pneumoniae Rx1

44.041

86.161

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

85.268

0.375