Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   ANG_RS10065 Genome accession   NZ_AP013072
Coordinates   2020128..2021150 (-) Length   340 a.a.
NCBI ID   WP_038677372.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2015128..2026150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS10030 (ANG_2035) - 2016149..2017348 (-) 1200 WP_003035323.1 acetate kinase -
  ANG_RS10035 (ANG_2036) - 2017395..2018348 (-) 954 Protein_1984 class I SAM-dependent methyltransferase -
  ANG_RS10040 (ANG_2037) comGG 2018433..2018759 (-) 327 WP_020999447.1 competence type IV pilus minor pilin ComGG -
  ANG_RS10045 (ANG_2038) comGF/cglF 2018740..2019177 (-) 438 WP_003035329.1 competence type IV pilus minor pilin ComGF Machinery gene
  ANG_RS10050 (ANG_2039) comGE/cglE 2019161..2019454 (-) 294 WP_003035318.1 competence type IV pilus minor pilin ComGE Machinery gene
  ANG_RS10055 (ANG_2040) comYD 2019426..2019854 (-) 429 WP_020999411.1 competence type IV pilus minor pilin ComGD Machinery gene
  ANG_RS10060 (ANG_2041) comYC 2019814..2020131 (-) 318 WP_020998068.1 competence type IV pilus major pilin ComGC Machinery gene
  ANG_RS10065 (ANG_2042) comYB 2020128..2021150 (-) 1023 WP_038677372.1 competence type IV pilus assembly protein ComGB Machinery gene
  ANG_RS10070 (ANG_2043) comYA 2021092..2022033 (-) 942 WP_006268058.1 competence type IV pilus ATPase ComGA Machinery gene
  ANG_RS10075 (ANG_2044) - 2022103..2022468 (-) 366 WP_022525692.1 DUF1033 family protein -
  ANG_RS10080 (ANG_2045) glnA 2022656..2024002 (-) 1347 WP_025272015.1 type I glutamate--ammonia ligase -
  ANG_RS10085 (ANG_2046) - 2024041..2024400 (-) 360 WP_003073972.1 MerR family transcriptional regulator -
  ANG_RS10090 (ANG_2047) - 2024477..2025007 (-) 531 WP_003033434.1 FUSC family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 39255.43 Da        Isoelectric Point: 9.7633

>NTDB_id=65555 ANG_RS10065 WP_038677372.1 2020128..2021150(-) (comYB) [Streptococcus anginosus subsp. whileyi MAS624]
MQQDISLLSRQKRKKLSIVRQKKVVELLNNLFSSGFHLAEMIDFLKRSALLEKTYVEKMKEGLATGKPFSEIMASLGFSD
SVVTQLSLAELHGNLSLSLNKIEEYLENVSTVKKKLIEVATYPFILLIFLVFIMLGLRNYLLPQLERQNSATQLISQLPQ
IFLGSVGVVFALFAIGFYWFRKRSQIRVFSLLSRLPFWGTFIQTYLTAYYAREWGNMIGQGLELSQIFQMMQGQRSAMFQ
EIGKDLEVALQNGQEFSQVVKHYPFFKKELGLMIEYGEVKSKLGCELEVYAQKTWEVFFKRVHQAMNIIQPLVFVFVALM
IVLLYAAMLLPIYQNMEVQL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=65555 ANG_RS10065 WP_038677372.1 2020128..2021150(-) (comYB) [Streptococcus anginosus subsp. whileyi MAS624]
ATGCAGCAGGACATATCACTTTTGAGCAGGCAGAAACGGAAAAAATTATCCATAGTTAGGCAGAAAAAAGTCGTAGAGTT
GCTGAATAATCTTTTTTCTAGCGGCTTTCATTTAGCAGAAATGATTGATTTTTTGAAGCGGAGTGCCCTGCTAGAAAAAA
CCTATGTGGAAAAGATGAAAGAGGGTTTAGCAACAGGAAAACCTTTTTCAGAAATTATGGCTAGTTTAGGATTTTCAGAT
AGTGTTGTCACCCAGCTTTCACTGGCAGAGCTACATGGGAATCTCTCACTCAGCCTGAATAAGATTGAGGAATACTTGGA
AAATGTCTCAACAGTCAAGAAAAAGTTAATTGAGGTAGCCACTTATCCATTCATTTTACTTATTTTTTTAGTATTCATTA
TGTTAGGGCTGCGCAATTATTTACTTCCGCAGTTAGAACGCCAAAACAGTGCAACGCAGCTGATTAGTCAGTTGCCGCAA
ATTTTTCTGGGTTCAGTAGGAGTTGTTTTTGCTTTGTTTGCGATAGGTTTTTATTGGTTTAGAAAAAGATCACAAATAAG
AGTATTTAGTTTGTTGTCTCGACTTCCTTTTTGGGGCACTTTTATTCAAACCTATTTGACAGCTTATTATGCGAGAGAAT
GGGGAAATATGATTGGTCAAGGCTTAGAACTCAGTCAGATTTTCCAGATGATGCAAGGACAGCGCTCTGCTATGTTTCAA
GAGATTGGAAAAGATTTAGAAGTAGCACTGCAAAATGGTCAGGAATTTTCACAAGTAGTTAAGCATTATCCATTTTTTAA
AAAAGAATTGGGGTTGATGATTGAATATGGGGAAGTGAAATCCAAATTGGGGTGCGAATTAGAAGTTTATGCTCAAAAAA
CGTGGGAGGTGTTTTTTAAACGTGTTCATCAAGCGATGAATATCATTCAGCCATTAGTATTTGTCTTTGTGGCGTTGATG
ATTGTATTGTTGTATGCGGCCATGTTGCTGCCAATTTATCAAAATATGGAGGTTCAATTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

72.647

100

0.726
  comGB/cglB Streptococcus mitis NCTC 12261

67.857

98.824

0.671
  comGB/cglB Streptococcus mitis SK321

67.56

98.824

0.668
  comGB/cglB Streptococcus pneumoniae TIGR4

66.667

98.824

0.659
  comGB/cglB Streptococcus pneumoniae R6

66.667

98.824

0.659
  comGB/cglB Streptococcus pneumoniae Rx1

66.667

98.824

0.659
  comGB/cglB Streptococcus pneumoniae D39

66.667

98.824

0.659
  comYB Streptococcus mutans UA159

61.696

100

0.621
  comYB Streptococcus mutans UA140

61.404

100

0.618
  comGB Lactococcus lactis subsp. cremoris KW2

51.929

99.118

0.515

Multiple sequence alignment