Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG915_RS29420 Genome accession   NZ_CP108165
Coordinates   6653407..6654087 (+) Length   226 a.a.
NCBI ID   WP_261708770.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00151     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6648407..6659087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG915_RS29390 (OG915_29420) - 6649129..6649431 (+) 303 Protein_5805 transposase -
  OG915_RS29395 (OG915_29425) - 6649598..6649981 (-) 384 WP_326791143.1 hypothetical protein -
  OG915_RS29410 (OG915_29440) tig 6650839..6652227 (+) 1389 WP_326787792.1 trigger factor -
  OG915_RS29415 (OG915_29445) clpP 6652684..6653289 (+) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG915_RS29420 (OG915_29450) clpP 6653407..6654087 (+) 681 WP_261708770.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG915_RS29425 (OG915_29455) clpX 6654248..6655534 (+) 1287 WP_326787793.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG915_RS29430 (OG915_29460) - 6655694..6656662 (-) 969 WP_326787794.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24937.39 Da        Isoelectric Point: 4.6288

>NTDB_id=655243 OG915_RS29420 WP_261708770.1 6653407..6654087(+) (clpP) [Streptomyces sp. NBC_00151]
MNDFPGSGLFARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=655243 OG915_RS29420 WP_261708770.1 6653407..6654087(+) (clpP) [Streptomyces sp. NBC_00151]
GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCATTTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGTCAGGCCGCCTCGGCCGCCGCGATCCTTCTCGCAGCCGGTACGCCTG
GCAAGCGCATGGCACTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGGCAGGTCTCGGAC
CTCGAGATCGCCGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACGACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCACTGGCCTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACTCCGCAGTCGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

45.729

88.053

0.403
  clpP Lactococcus lactis subsp. cremoris KW2

45.729

88.053

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.724

88.053

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389