Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG851_RS14940 Genome accession   NZ_CP108156
Coordinates   3218671..3219342 (-) Length   223 a.a.
NCBI ID   WP_323179072.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00161     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3213671..3224342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG851_RS14925 (OG851_14905) - 3215921..3216850 (+) 930 WP_266629271.1 hypothetical protein -
  OG851_RS14930 (OG851_14910) - 3216905..3217117 (-) 213 WP_266629269.1 hypothetical protein -
  OG851_RS14935 (OG851_14915) clpX 3217231..3218517 (-) 1287 WP_030159377.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG851_RS14940 (OG851_14920) clpP 3218671..3219342 (-) 672 WP_323179072.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG851_RS14945 (OG851_14925) clpP 3219429..3220046 (-) 618 WP_266629264.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG851_RS14950 (OG851_14930) tig 3220370..3221773 (-) 1404 WP_266629262.1 trigger factor -
  OG851_RS14965 (OG851_14945) - 3222324..3223478 (-) 1155 WP_406512078.1 tyrosine-type recombinase/integrase -
  OG851_RS14970 (OG851_14950) - 3223478..3223678 (-) 201 WP_266629260.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24586.05 Da        Isoelectric Point: 4.9265

>NTDB_id=655054 OG851_RS14940 WP_323179072.1 3218671..3219342(-) (clpP) [Streptomyces sp. NBC_00161]
MVNTQMHMNNLSPASGLYTGAPVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLS
DLEIAAREILRMRDQLETMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide


Download         Length: 672 bp        

>NTDB_id=655054 OG851_RS14940 WP_323179072.1 3218671..3219342(-) (clpP) [Streptomyces sp. NBC_00161]
ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCACCGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTGGCCGCCGGCACCC
CCGGCAAGCGCATGGCACTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTCGGGCGGCACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAGGGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACCACGCC
GATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACC
AGATCGTCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

85.202

0.448
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

84.305

0.417
  clpP Streptococcus thermophilus LMD-9

45.876

86.996

0.399
  clpP Streptococcus pyogenes JRS4

45.876

86.996

0.399
  clpP Streptococcus pyogenes MGAS315

45.876

86.996

0.399
  clpP Streptococcus thermophilus LMG 18311

45.876

86.996

0.399
  clpP Streptococcus mutans UA159

46.316

85.202

0.395
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

85.65

0.395
  clpP Streptococcus pneumoniae D39

45.55

85.65

0.39
  clpP Streptococcus pneumoniae TIGR4

45.55

85.65

0.39
  clpP Streptococcus pneumoniae R6

45.55

85.65

0.39
  clpP Streptococcus pneumoniae Rx1

45.55

85.65

0.39
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

85.65

0.386