Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   L8956_RS08635 Genome accession   NZ_CP091882
Coordinates   1786188..1787420 (+) Length   410 a.a.
NCBI ID   WP_239860698.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain JHS1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1781188..1792420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8956_RS08610 (L8956_08610) - 1782399..1783124 (+) 726 WP_239860695.1 SDR family oxidoreductase -
  L8956_RS08615 (L8956_08615) - 1783207..1783464 (+) 258 WP_057278386.1 DUF3243 domain-containing protein -
  L8956_RS08620 (L8956_08620) - 1783708..1784499 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  L8956_RS08625 (L8956_08625) - 1784508..1785416 (+) 909 WP_347881710.1 RodZ family helix-turn-helix domain-containing protein -
  L8956_RS08630 (L8956_08630) pgsA 1785581..1786165 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L8956_RS08635 (L8956_08635) cinA 1786188..1787420 (+) 1233 WP_239860698.1 competence/damage-inducible protein A Machinery gene
  L8956_RS08640 (L8956_08640) recA 1787769..1788815 (+) 1047 WP_034313522.1 recombinase RecA Machinery gene
  L8956_RS08645 (L8956_08645) rny 1789168..1790727 (+) 1560 WP_034313519.1 ribonuclease Y -
  L8956_RS08650 (L8956_08650) - 1790880..1791677 (+) 798 WP_063591644.1 TIGR00282 family metallophosphoesterase -
  L8956_RS08655 (L8956_08655) spoVS 1791851..1792111 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45022.37 Da        Isoelectric Point: 5.1367

>NTDB_id=654225 L8956_RS08635 WP_239860698.1 1786188..1787420(+) (cinA) [Peribacillus frigoritolerans strain JHS1]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKGPSKEKCEELILETE
KEILGRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGMVCYTNDAKSNVLGVSDD
TISEYGVVSGECAMEMASNVRRKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=654225 L8956_RS08635 WP_239860698.1 1786188..1787420(+) (cinA) [Peribacillus frigoritolerans strain JHS1]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGTCAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGCCGATTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTTTTTACCGGTGGGCTTGGTCCTACCAAAGATGACTTAACGAAGGAAACG
ATTGCTCGCCATATCGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAATAACAAAAAGCAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CCCCAGGAATGGTTTTGTCCAAATCCGGGATTACATATATGCTCCTGCCTGGTCCACCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTTTACGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATCGCTCCGCTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCCAAAGGCCCTTCCAAAGAAAAATGCGAAGAACTTATTTTAGAAACGGAA
AAAGAAATTCTTGGCAGGGTCGGCAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATCGCGGCAGCTGAAAGCTTGACCGGGGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTTAAGGGCGGAATGGTCTGCTATACGAATGATGCGAAGTCCAATGTCCTCGGCGTCAGTGATGAT
ACCATATCTGAGTATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGAAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGTGTTGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTTGGTACAGTATTTATTGGCATTT
CCTATCGCGATGGAAACACTCATTTCAAGGAGTTGAATCTTTCCGGTAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAA
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus mitis SK321

44.762

100

0.459
  cinA Streptococcus pneumoniae TIGR4

44.762

100

0.459
  cinA Streptococcus mitis NCTC 12261

44.524

100

0.456
  cinA Streptococcus pneumoniae Rx1

44.286

100

0.454
  cinA Streptococcus pneumoniae R6

44.286

100

0.454
  cinA Streptococcus pneumoniae D39

44.048

100

0.451
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

38.847

97.317

0.378