Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA30_RS10525 Genome accession   NZ_CP108109
Coordinates   2518664..2519350 (-) Length   228 a.a.
NCBI ID   WP_328917809.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00223     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2513664..2524350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA30_RS10515 (OHA30_10505) - 2516064..2517083 (+) 1020 WP_328913554.1 hypothetical protein -
  OHA30_RS10520 (OHA30_10510) clpX 2517165..2518448 (-) 1284 WP_328913555.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA30_RS10525 (OHA30_10515) clpP 2518664..2519350 (-) 687 WP_328917809.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA30_RS10530 (OHA30_10520) clpP 2519454..2520071 (-) 618 WP_328917810.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA30_RS10535 (OHA30_10525) tig 2520364..2521794 (-) 1431 WP_328913556.1 trigger factor -
  OHA30_RS10550 (OHA30_10540) - 2522326..2522778 (-) 453 WP_328913557.1 Lrp/AsnC family transcriptional regulator -
  OHA30_RS10555 (OHA30_10545) - 2522899..2523954 (+) 1056 WP_328913558.1 asparaginase -
  OHA30_RS10560 (OHA30_10550) - 2523919..2524113 (-) 195 WP_328913559.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25217.57 Da        Isoelectric Point: 4.5212

>NTDB_id=653915 OHA30_RS10525 WP_328917809.1 2518664..2519350(-) (clpP) [Streptomyces sp. NBC_00223]
MNFPGSGLYERTEAERPGVFSAEARYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGSPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEIIRMRQQLEEMLAKHSTTPIEQIRDDIERDKILTAEESLAYGLVDQIVSTRKTSVSSEIPH

Nucleotide


Download         Length: 687 bp        

>NTDB_id=653915 OHA30_RS10525 WP_328917809.1 2518664..2519350(-) (clpP) [Streptomyces sp. NBC_00223]
TTGAACTTCCCCGGCAGCGGCCTGTACGAGCGCACCGAGGCCGAGCGCCCCGGCGTGTTCTCCGCCGAGGCCCGCTATGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCCCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCCGTCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCGATCTACGACACCATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTGGCCGCCGGCAGCCCCG
GCAAGCGGATGGCCCTGCCGAACGCGCGGGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCGGCGAACGAGATCATCCGGATGCGCCAGCAGCTGGAGGAGATGCTCGCCAAGCACTCCACCACGCCGAT
CGAGCAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACCGCCGAGGAGTCGCTGGCCTACGGTCTGGTCGACCAGA
TCGTGTCCACCCGCAAGACTTCCGTGTCCTCCGAGATCCCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

83.333

0.425
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

82.456

0.395
  clpP Streptococcus mutans UA159

45.876

85.088

0.39
  clpP Streptococcus pyogenes JRS4

46.316

83.333

0.386
  clpP Streptococcus pyogenes MGAS315

46.316

83.333

0.386
  clpP Streptococcus thermophilus LMD-9

44.33

85.088

0.377
  clpP Streptococcus thermophilus LMG 18311

44.33

85.088

0.377
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

83.772

0.373
  clpP Streptococcus pneumoniae Rx1

44.041

84.649

0.373
  clpP Streptococcus pneumoniae D39

44.041

84.649

0.373
  clpP Streptococcus pneumoniae R6

44.041

84.649

0.373
  clpP Streptococcus pneumoniae TIGR4

44.041

84.649

0.373
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

83.772

0.364