NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG537_RS28345	Genome accession	NZ_CP108102
Coordinates	6395942..6396544 (+)	Length	200 a.a.
NCBI ID	WP_033285987.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00228
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 6390942..6401544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG537_RS28315 (OG537_28290)	-	6391603..6392058 (+)	456	WP_328933972.1	HD domain-containing protein	-
OG537_RS28320 (OG537_28295)	-	6392069..6393202 (-)	1134	WP_328933973.1	acyltransferase family protein	-
OG537_RS28325 (OG537_28300)	-	6393506..6393700 (+)	195	WP_026178055.1	hypothetical protein	-
OG537_RS28340 (OG537_28315)	tig	6394302..6395687 (+)	1386	WP_328831437.1	trigger factor	-
OG537_RS28345 (OG537_28320)	clpP	6395942..6396544 (+)	603	WP_033285987.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG537_RS28350 (OG537_28325)	clpP	6396594..6397274 (+)	681	WP_328831439.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG537_RS28355 (OG537_28330)	clpX	6397435..6398721 (+)	1287	WP_266768669.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG537_RS28360 (OG537_28335)	-	6398801..6399808 (-)	1008	WP_328933974.1	hypothetical protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 21139.05 Da Isoelectric Point: 4.6747

                                >NTDB_id=653785 OG537_RS28345 WP_033285987.1 6395942..6396544(+) (clpP) [Streptomyces sp. NBC_00228]

MPTAAGEPSIGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI

KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQSIEQ

ITRDSDRDRWFDALEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide

Download Length: 603 bp

                                >NTDB_id=653785 OG537_RS28345 WP_033285987.1 6395942..6396544(+) (clpP) [Streptomyces sp. NBC_00228]

ATGCCTACAGCCGCCGGCGAGCCCTCCATCGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGATCAT

CTTCCTCGGCCAGGCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTCCTGCTCCTTGCCGCTGACCCCGACA

AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC

AAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTTCTCAGCGCGGGTACCCCGGGCAA

GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCCGGTTCGGCCTCCGACATCAAGA

TCCACGCGGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGTCCCAGCACACGGGCCAGAGCATCGAGCAG

ATCACCCGCGACTCCGACCGCGACCGCTGGTTCGACGCGCTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTGATCCC

CACGGCCGCCGGTATGCCGGGCGGCGGCGGTACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	56.15	93.5	0.525
clpP	Lactococcus lactis subsp. cremoris KW2	52.91	94.5	0.5
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.381	94.5	0.495
clpP	Streptococcus mutans UA159	52.381	94.5	0.495
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.579	95	0.49
clpP	Streptococcus pyogenes MGAS315	49.735	94.5	0.47
clpP	Streptococcus pyogenes JRS4	49.735	94.5	0.47
clpP	Streptococcus thermophilus LMG 18311	49.206	94.5	0.465
clpP	Streptococcus thermophilus LMD-9	49.206	94.5	0.465
clpP	Streptococcus pneumoniae Rx1	48.677	94.5	0.46
clpP	Streptococcus pneumoniae D39	48.677	94.5	0.46
clpP	Streptococcus pneumoniae R6	48.677	94.5	0.46
clpP	Streptococcus pneumoniae TIGR4	48.677	94.5	0.46

Detailed information NTG0653785