Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT52_RS20750 Genome accession   NZ_CP108093
Coordinates   4805633..4806316 (+) Length   227 a.a.
NCBI ID   WP_328723829.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00247     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4800633..4811316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT52_RS20725 (OHT52_20705) - 4802172..4802366 (+) 195 WP_328721676.1 hypothetical protein -
  OHT52_RS20740 (OHT52_20720) tig 4803114..4804490 (+) 1377 WP_328721677.1 trigger factor -
  OHT52_RS20745 (OHT52_20725) - 4804938..4805543 (+) 606 WP_328723828.1 ATP-dependent Clp protease proteolytic subunit -
  OHT52_RS20750 (OHT52_20730) clpP 4805633..4806316 (+) 684 WP_328723829.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT52_RS20755 (OHT52_20735) clpX 4806474..4807772 (+) 1299 WP_328721678.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT52_RS20760 (OHT52_20740) - 4807868..4808905 (-) 1038 WP_328721679.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24880.39 Da        Isoelectric Point: 4.8047

>NTDB_id=653367 OHT52_RS20750 WP_328723829.1 4805633..4806316(+) (clpP) [Streptomyces sp. NBC_00247]
MVKTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLMCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKISEDIERDKILTAEEALAYGLVDQIVTTRKTSAGAAV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=653367 OHT52_RS20750 WP_328723829.1 4805633..4806316(+) (clpP) [Streptomyces sp. NBC_00247]
ATGGTGAAGACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCCTACGCGAAGCTCTTCGAGGAGCGCA
TCATCTTCCTCGGCGTGCAGATCGACGACGCCTCGGCCAACGACGTGATGGCGCAGCTGATGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACCGTCTGCATGGGCCAGGCCGCCTCCGCCGCCGCCATCCTGCTGGCCGCCGGTACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGTGTCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGCACCCAGCTGGAGGAGATGCTGGCGAAGCACTCGACCACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGAGGCCCTGGCGTACGGTCTGGTGGACC
AGATCGTCACCACCCGTAAGACCTCGGCCGGAGCCGCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

83.7

0.432
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.26

0.401
  clpP Streptococcus thermophilus LMG 18311

45.361

85.463

0.388
  clpP Streptococcus thermophilus LMD-9

45.361

85.463

0.388
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

84.141

0.383
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

84.141

0.379
  clpP Streptococcus pyogenes MGAS315

44.737

83.7

0.374
  clpP Streptococcus pyogenes JRS4

44.737

83.7

0.374
  clpP Streptococcus pneumoniae TIGR4

44.211

83.7

0.37
  clpP Streptococcus pneumoniae D39

44.211

83.7

0.37
  clpP Streptococcus pneumoniae Rx1

44.211

83.7

0.37
  clpP Streptococcus pneumoniae R6

44.211

83.7

0.37