Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG718_RS35185 Genome accession   NZ_CP108081
Coordinates   7913320..7914000 (+) Length   226 a.a.
NCBI ID   WP_143632144.1    Uniprot ID   A0ABU0T0E3
Organism   Streptomyces sp. NBC_00258     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7908320..7919000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS35155 (OG718_35140) - 7908775..7908969 (+) 195 WP_055611884.1 hypothetical protein -
  OG718_RS35160 (OG718_35145) - 7909331..7910170 (+) 840 WP_260694832.1 alpha/beta hydrolase -
  OG718_RS35175 (OG718_35160) tig 7910760..7912190 (+) 1431 WP_143632147.1 trigger factor -
  OG718_RS35180 (OG718_35165) clpP 7912613..7913218 (+) 606 WP_186001018.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG718_RS35185 (OG718_35170) clpP 7913320..7914000 (+) 681 WP_143632144.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG718_RS35190 (OG718_35175) clpX 7914161..7915447 (+) 1287 WP_143632143.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG718_RS35195 (OG718_35180) - 7915627..7915893 (+) 267 WP_143632142.1 hypothetical protein -
  OG718_RS35200 (OG718_35185) - 7915995..7916936 (-) 942 WP_143632140.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24956.35 Da        Isoelectric Point: 4.5652

>NTDB_id=653032 OG718_RS35185 WP_143632144.1 7913320..7914000(+) (clpP) [Streptomyces sp. NBC_00258]
MNDFPGSGLYARTEAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNASVA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=653032 OG718_RS35185 WP_143632144.1 7913320..7914000(+) (clpP) [Streptomyces sp. NBC_00258]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACAGAGGCCGAGTACACCGGCCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCACTCACTGCGATTTACGACACTATGCAGTT
CGTGAAGCCGGACATCCAGACGGTATGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCACTTCCGAACGCACGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGAGGCCAGGTCTCGGAC
CTCGAAATCGCGGCGAACGAGATCCTCCGCATGCGCGCCCAGCTGGAAGACATGCTGGCCAAGCACTCGACGACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTCTCGTACGGCCTGATCGACCAGA
TCATCTCGACCCGGAAGATGAACAACGCCTCGGTCGCGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376