Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA28_RS31135 Genome accession   NZ_CP108075
Coordinates   6862698..6863357 (+) Length   219 a.a.
NCBI ID   WP_227294656.1    Uniprot ID   A0ABV4SGH9
Organism   Streptomyces sp. NBC_00269     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6857698..6868357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA28_RS31105 (OHA28_31140) - 6857968..6859116 (-) 1149 WP_326713020.1 acyltransferase family protein -
  OHA28_RS31110 (OHA28_31145) - 6859652..6859846 (+) 195 WP_100594330.1 hypothetical protein -
  OHA28_RS31125 (OHA28_31160) tig 6860363..6861751 (+) 1389 WP_266564251.1 trigger factor -
  OHA28_RS31130 (OHA28_31165) clpP 6862036..6862644 (+) 609 WP_266569404.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA28_RS31135 (OHA28_31170) clpP 6862698..6863357 (+) 660 WP_227294656.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA28_RS31140 (OHA28_31175) clpX 6863513..6864799 (+) 1287 WP_116512991.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA28_RS31145 (OHA28_31180) - 6864881..6865855 (-) 975 WP_326713021.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24051.37 Da        Isoelectric Point: 4.5229

>NTDB_id=652759 OHA28_RS31135 WP_227294656.1 6862698..6863357(+) (clpP) [Streptomyces sp. NBC_00269]
MNNIPGSGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISIY
INSPGGSFTALTAIYDTMQFVKPDIQTVCMGQASSAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAANE
ILRMREQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIISTRKMNNSAAA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=652759 OHA28_RS31135 WP_227294656.1 6862698..6863357(+) (clpP) [Streptomyces sp. NBC_00269]
ATGAACAACATCCCCGGCAGCGGTCTGTACACCGGCCCGCAGGTCGACAACCGCTACGTGATCCCGCGCTTCGTCGAGCG
CACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGATCG
ACGACGCGTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTCCATCTAC
ATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACGGCCATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCAGAC
GGTCTGCATGGGCCAGGCGTCCTCCGCGGCCGCCGTGCTCCTCGCGGCCGGTACGCCGGGCAAGCGCATGGCGCTGCCGA
ACGCCCGCGTCCTGATCCACCAGCCCTCCGGCGGCACCGGCCGTGAGCAGCTCTCCGACCTGGAGATCGCCGCGAACGAG
ATCCTCCGGATGCGTGAGCAGCTCGAGGAGATGCTGGCCAAGCACTCCACGACGCCGATCGAGAAGATCCGCGACGACAT
CGAGCGCGACAAGATCCTGACGGCCGAGGACGCCCTGGCGTACGGCCTGATCGACCAGATCATCTCCACCCGGAAGATGA
ACAACTCCGCGGCCGCGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

86.758

0.452
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

85.845

0.425
  clpP Lactococcus lactis subsp. cremoris KW2

44.724

90.868

0.406
  clpP Streptococcus pyogenes JRS4

45.641

89.041

0.406
  clpP Streptococcus pyogenes MGAS315

45.641

89.041

0.406
  clpP Streptococcus thermophilus LMG 18311

45.641

89.041

0.406
  clpP Streptococcus thermophilus LMD-9

45.641

89.041

0.406
  clpP Streptococcus pneumoniae Rx1

44.898

89.498

0.402
  clpP Streptococcus pneumoniae D39

44.898

89.498

0.402
  clpP Streptococcus pneumoniae R6

44.898

89.498

0.402
  clpP Streptococcus pneumoniae TIGR4

44.898

89.498

0.402
  clpP Streptococcus mutans UA159

45.128

89.041

0.402
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.719

90.868

0.397