NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG798_RS20895	Genome accession	NZ_CP108070
Coordinates	4507394..4507999 (-)	Length	201 a.a.
NCBI ID	WP_054231895.1	Uniprot ID	A0ABU3UTY5
Organism	Streptomyces sp. NBC_00271
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4502394..4512999

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG798_RS20880 (OG798_20955)	-	4504011..4505006 (+)	996	WP_095854687.1	hypothetical protein	-
OG798_RS20885 (OG798_20960)	clpX	4505116..4506402 (-)	1287	WP_067370615.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG798_RS20890 (OG798_20965)	clpP	4506574..4507254 (-)	681	WP_060897739.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG798_RS20895 (OG798_20970)	clpP	4507394..4507999 (-)	606	WP_054231895.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG798_RS20900 (OG798_20975)	tig	4508431..4509837 (-)	1407	WP_095854685.1	trigger factor	-
OG798_RS20915 (OG798_20990)	-	4510649..4510843 (-)	195	WP_054231893.1	hypothetical protein	-
OG798_RS20920 (OG798_20995)	-	4511486..4512700 (+)	1215	WP_097225950.1	acyltransferase family protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 21293.23 Da Isoelectric Point: 4.6747

                                >NTDB_id=652640 OG798_RS20895 WP_054231895.1 4507394..4507999(-) (clpP) [Streptomyces sp. NBC_00271]

MPTAAGEPFGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI

KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ

ITRDSDRDRWFDPIEAKEYGLIDDIVPTAAGMPGGGGTGAS

Nucleotide

Download Length: 606 bp

                                >NTDB_id=652640 OG798_RS20895 WP_054231895.1 4507394..4507999(-) (clpP) [Streptomyces sp. NBC_00271]

ATGCCCACAGCTGCCGGCGAACCCTTCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGATCAT

CTTCCTCGGCCAGGCGGTCGACGATGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCGCCGACCCGGACA

AGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC

AAGAACGACGTGGTGACGATCGCCATGGGCATGGCTGCCTCGATGGGTCAGTTCCTGCTCAGCGCGGGCACCCCCGGCAA

GCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCGGCCGGCCTGGCGGGCTCCGCGTCGGACATCAAGA

TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCCGAGCTGACCTCCTTCCACACCGGTCAGACGGTCGAGCAG

ATCACTCGTGACTCGGACCGCGACCGTTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCGTGCC

CACCGCTGCTGGTATGCCGGGCGGTGGCGGCACCGGGGCGTCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	56.684	93.035	0.527
clpP	Lactococcus lactis subsp. cremoris KW2	52.381	94.03	0.493
clpP	Streptococcus mutans UA159	51.852	94.03	0.488
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.852	94.03	0.488
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.023	86.567	0.468
clpP	Streptococcus pyogenes MGAS315	49.206	94.03	0.463
clpP	Streptococcus pyogenes JRS4	49.206	94.03	0.463
clpP	Streptococcus thermophilus LMG 18311	48.677	94.03	0.458
clpP	Streptococcus thermophilus LMD-9	48.677	94.03	0.458
clpP	Streptococcus pneumoniae Rx1	48.148	94.03	0.453
clpP	Streptococcus pneumoniae D39	48.148	94.03	0.453
clpP	Streptococcus pneumoniae R6	48.148	94.03	0.453
clpP	Streptococcus pneumoniae TIGR4	48.148	94.03	0.453

Detailed information NTG0652640