NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG386_RS28235	Genome accession	NZ_CP108067
Coordinates	6380636..6381253 (+)	Length	205 a.a.
NCBI ID	WP_030008567.1	Uniprot ID	A0ABQ3TIE9
Organism	Streptomyces sp. NBC_00273
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 6375636..6386253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG386_RS28205 (OG386_28215)	-	6375868..6376062 (+)	195	WP_030008564.1	membrane protein	-
OG386_RS28210 (OG386_28220)	-	6376375..6376953 (+)	579	WP_328790437.1	TIGR04222 domain-containing membrane protein	-
OG386_RS28215 (OG386_28225)	-	6377274..6377897 (+)	624	WP_328790438.1	hypothetical protein	-
OG386_RS28230 (OG386_28245)	tig	6378967..6380355 (+)	1389	WP_328790439.1	trigger factor	-
OG386_RS28235 (OG386_28250)	clpP	6380636..6381253 (+)	618	WP_030008567.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG386_RS28240 (OG386_28255)	clpP	6381308..6381973 (+)	666	WP_150257432.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG386_RS28245 (OG386_28260)	clpX	6382127..6383413 (+)	1287	WP_030008569.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG386_RS28250 (OG386_28265)	-	6383491..6384432 (-)	942	WP_328790440.1	hypothetical protein	-

Sequence

Protein

Download Length: 205 a.a. Molecular weight: 21667.59 Da Isoelectric Point: 4.6667

                                >NTDB_id=652496 OG386_RS28235 WP_030008567.1 6380636..6381253(+) (clpP) [Streptomyces sp. NBC_00273]

MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAVYD

TMQFIPNDVVTIGMGMAASMGQFLLTGGAKGKRFALPNTDILMHQGSAGIGGTASDIKIQAQYLLRTKQRMAEITAFHSG

QTVEAIIRDGDRDRWFTAEEAKDYGLIDEIISAASNAPGGGGTGA

Nucleotide

Download Length: 618 bp

                                >NTDB_id=652496 OG386_RS28235 WP_030008567.1 6380636..6381253(+) (clpP) [Streptomyces sp. NBC_00273]

GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTCCT

CGGCGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTGCTCCTGG

CCGCCGAGCCGGAGAAGGACATCTACCTCTACATCAACAGCCCCGGTGGCTCCGTGACGGCCGGCATGGCCGTCTACGAC

ACCATGCAGTTCATCCCGAACGACGTCGTCACCATCGGCATGGGCATGGCCGCCTCGATGGGGCAGTTCCTGCTCACCGG

TGGCGCCAAGGGCAAGCGCTTCGCCCTGCCGAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGCACCG

CGTCGGACATCAAGATCCAGGCCCAGTACCTGCTGCGCACCAAGCAGCGGATGGCCGAGATCACCGCGTTCCACTCGGGC

CAGACCGTGGAGGCGATCATCCGCGACGGTGACCGCGACCGCTGGTTCACCGCCGAGGAGGCCAAGGACTACGGCCTCAT

CGACGAGATCATCTCGGCCGCGTCCAACGCGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	53.403	93.171	0.498
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.053	92.683	0.473
clpP	Lactococcus lactis subsp. cremoris KW2	50.532	91.707	0.463
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50	91.707	0.459
clpP	Streptococcus mutans UA159	53.179	84.39	0.449
clpP	Streptococcus pneumoniae R6	50.847	86.341	0.439
clpP	Streptococcus pneumoniae TIGR4	50.847	86.341	0.439
clpP	Streptococcus pneumoniae D39	50.847	86.341	0.439
clpP	Streptococcus pneumoniae Rx1	50.847	86.341	0.439
clpP	Streptococcus pyogenes MGAS315	51.445	84.39	0.434
clpP	Streptococcus pyogenes JRS4	51.445	84.39	0.434
clpP	Streptococcus thermophilus LMG 18311	50.575	84.878	0.429
clpP	Streptococcus thermophilus LMD-9	50.575	84.878	0.429

Detailed information NTG0652496