Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT76_RS15275 Genome accession   NZ_CP108053
Coordinates   3362009..3362617 (-) Length   202 a.a.
NCBI ID   WP_315888001.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3357009..3367617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS15255 (OHT76_15280) - 3358323..3359258 (+) 936 WP_328871368.1 hypothetical protein -
  OHT76_RS15260 (OHT76_15285) - 3359322..3359603 (-) 282 WP_328871369.1 hypothetical protein -
  OHT76_RS15265 (OHT76_15290) clpX 3359791..3361080 (-) 1290 WP_133926274.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT76_RS15270 (OHT76_15295) clpP 3361241..3361921 (-) 681 WP_328871370.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT76_RS15275 (OHT76_15300) clpP 3362009..3362617 (-) 609 WP_315888001.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT76_RS15280 (OHT76_15305) tig 3362985..3364388 (-) 1404 WP_328871371.1 trigger factor -
  OHT76_RS15295 (OHT76_15320) - 3364948..3365142 (-) 195 WP_150949237.1 hypothetical protein -
  OHT76_RS15300 (OHT76_15325) - 3365588..3366715 (+) 1128 WP_328871372.1 acyltransferase family protein -
  OHT76_RS15305 (OHT76_15330) - 3366727..3367158 (-) 432 WP_328871373.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21413.30 Da        Isoelectric Point: 4.8037

>NTDB_id=652085 OHT76_RS15275 WP_315888001.1 3362009..3362617(-) (clpP) [Streptomyces sp. NBC_00287]
MPSAAGEPSIGGGLGDHVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYMYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIE
QITRDSDRDRWFDAFEAKDYGLIDDVIPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=652085 OHT76_RS15275 WP_315888001.1 3362009..3362617(-) (clpP) [Streptomyces sp. NBC_00287]
ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGCGGTGGCCTCGGCGACCATGTCTACAACCGACTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTGTTGCTCCTTGCCGCAGACCCGG
ACAAGGACATCTACATGTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCGTCCGCCGGCCTCGCCGGCTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCTCGCAGCACACGGGCCAGACGATCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGACTACGGCCTCATCGACGACGTCAT
CCCCACGGCCGCCGGCATGCCGGGCGGCGGCGGTACCGGAGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

57.31

84.653

0.485
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.432

91.584

0.48
  clpP Lactococcus lactis subsp. cremoris KW2

52.174

91.089

0.475
  clpP Streptococcus mutans UA159

55.491

85.644

0.475
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.63

91.089

0.47
  clpP Streptococcus pyogenes JRS4

52.601

85.644

0.45
  clpP Streptococcus pyogenes MGAS315

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMG 18311

50.867

85.644

0.436
  clpP Streptococcus thermophilus LMD-9

50.867

85.644

0.436
  clpP Streptococcus pneumoniae Rx1

49.711

85.644

0.426
  clpP Streptococcus pneumoniae D39

49.711

85.644

0.426
  clpP Streptococcus pneumoniae R6

49.711

85.644

0.426
  clpP Streptococcus pneumoniae TIGR4

49.711

85.644

0.426