Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LVJ77_RS05600 Genome accession   NZ_CP091521
Coordinates   1161856..1162956 (-) Length   366 a.a.
NCBI ID   WP_027009673.1    Uniprot ID   -
Organism   Conchiformibius kuhniae strain 17694     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1156856..1167956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ77_RS05595 (LVJ77_09365) recC 1158569..1161868 (+) 3300 WP_027009674.1 exodeoxyribonuclease V subunit gamma Machinery gene
  LVJ77_RS05600 (LVJ77_09360) dprA 1161856..1162956 (-) 1101 WP_027009673.1 DNA-processing protein DprA Machinery gene
  LVJ77_RS05605 (LVJ77_09355) - 1163037..1163228 (-) 192 WP_156900841.1 hypothetical protein -
  LVJ77_RS05610 (LVJ77_09350) rnhB 1163444..1164043 (+) 600 WP_051255626.1 ribonuclease HII -
  LVJ77_RS05615 (LVJ77_09345) - 1164040..1164666 (+) 627 WP_034334674.1 triacylglycerol lipase -
  LVJ77_RS05620 (LVJ77_09340) - 1164809..1165051 (+) 243 WP_027009670.1 hypothetical protein -
  LVJ77_RS05625 (LVJ77_09335) - 1165005..1166243 (+) 1239 WP_245571944.1 replication initiation factor domain-containing protein -
  LVJ77_RS05630 (LVJ77_09330) - 1166243..1166452 (+) 210 WP_245571943.1 hypothetical protein -
  LVJ77_RS05635 (LVJ77_09325) - 1166473..1166787 (+) 315 WP_027009669.1 hypothetical protein -
  LVJ77_RS05640 (LVJ77_09320) - 1166872..1167102 (+) 231 WP_027009668.1 major capsid protein -
  LVJ77_RS05645 (LVJ77_09315) - 1167158..1167565 (+) 408 WP_027009667.1 hypothetical protein -
  LVJ77_RS05650 (LVJ77_09310) - 1167565..1167867 (+) 303 WP_027009666.1 hypothetical protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 38224.77 Da        Isoelectric Point: 7.1391

>NTDB_id=652040 LVJ77_RS05600 WP_027009673.1 1161856..1162956(-) (dprA) [Conchiformibius kuhniae strain 17694]
MDERERYAWLQLALTPYVGAESFLRLLRHYGSASAALGADADEVARLACNGKQAAKGWAQTDKARAAADAALEWARQSGC
RLLLLCDDDYPPLLGEGLTPPPLLFVRGDAGLLARPAVAVVGSRHATPQAVRIAGEFAQALSGRGITVVSGMASGIDAAA
HGGALDGIGRTVAVWGTGIDRVYPPANRALAHQIAERGAVVSEFPLGTKPVAGNFPRRNRIIAALARAVLVVEAALASGS
LITARLAAEMGREVMAVPGSIDNPHSKGCHQLIKQGAKLTETIDDIVQECPALSAAAPPVRAAPPPQQRPAEPHGPLLAA
LGYDPFHPDALAERLGMAADEVYAQLLELELSGRIAALSGGRFQRV

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=652040 LVJ77_RS05600 WP_027009673.1 1161856..1162956(-) (dprA) [Conchiformibius kuhniae strain 17694]
ATGGACGAACGGGAGCGTTATGCGTGGTTGCAATTGGCATTGACGCCGTATGTGGGGGCGGAAAGTTTTTTGCGGCTGTT
GCGCCATTACGGCTCGGCGTCGGCGGCGCTGGGGGCGGATGCGGACGAGGTGGCGCGGCTGGCGTGCAACGGCAAACAGG
CGGCGAAGGGGTGGGCGCAGACCGATAAGGCGCGCGCCGCCGCCGATGCCGCGCTGGAATGGGCGCGGCAGTCGGGCTGC
CGTTTGCTGTTGTTGTGCGATGACGATTATCCGCCTTTGCTCGGCGAGGGGCTGACGCCGCCGCCGTTGTTGTTTGTGCG
CGGCGATGCGGGTTTGTTGGCGCGTCCGGCGGTGGCGGTGGTGGGCAGCCGTCATGCCACGCCGCAGGCGGTACGCATTG
CGGGCGAGTTTGCCCAAGCCTTGAGCGGACGGGGCATTACGGTGGTGTCGGGCATGGCTTCGGGCATTGATGCGGCGGCG
CACGGCGGGGCGTTGGACGGCATCGGGCGCACGGTGGCGGTGTGGGGGACGGGCATCGACCGCGTGTATCCGCCCGCCAA
CCGCGCTTTGGCGCACCAAATTGCCGAACGGGGGGCGGTTGTGTCGGAATTTCCTTTGGGGACGAAGCCTGTGGCGGGCA
ATTTTCCGCGCCGCAACCGCATTATTGCGGCGTTGGCGCGGGCGGTGCTGGTGGTGGAAGCGGCGTTGGCGAGCGGTTCG
CTGATTACGGCGCGTTTGGCGGCGGAAATGGGGCGGGAGGTGATGGCGGTACCCGGCTCGATTGACAATCCGCACAGCAA
GGGCTGTCATCAGTTGATTAAGCAGGGGGCGAAGCTGACGGAAACCATTGACGACATCGTGCAGGAATGCCCCGCGCTGT
CGGCGGCTGCCCCGCCCGTGCGTGCCGCGCCGCCGCCGCAACAACGCCCTGCCGAACCGCACGGCCCGCTGCTCGCCGCT
TTGGGCTACGACCCTTTCCACCCCGATGCGCTGGCGGAACGTTTGGGCATGGCCGCCGATGAGGTGTACGCGCAATTGCT
GGAGCTGGAGTTGTCGGGGCGGATTGCGGCGTTGTCGGGCGGGCGTTTTCAGCGCGTGTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(302-361)

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

58.376

100

0.628
  dprA Neisseria meningitidis strain C311

57.576

100

0.623
  dprA Neisseria meningitidis MC58

57.576

100

0.623
  dprA Neisseria gonorrhoeae MS11

57.614

100

0.62
  dprA Vibrio campbellii strain DS40M4

42.936

98.634

0.423
  dprA Vibrio cholerae strain A1552

41.223

100

0.423
  dprA Glaesserella parasuis strain SC1401

38.859

100

0.391
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.286

99.454

0.391
  dprA Acinetobacter baylyi ADP1

36.164

99.727

0.361