Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   LVJ77_RS05595 Genome accession   NZ_CP091521
Coordinates   1158569..1161868 (+) Length   1099 a.a.
NCBI ID   WP_027009674.1    Uniprot ID   -
Organism   Conchiformibius kuhniae strain 17694     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153569..1166868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ77_RS05595 (LVJ77_09365) recC 1158569..1161868 (+) 3300 WP_027009674.1 exodeoxyribonuclease V subunit gamma Machinery gene
  LVJ77_RS05600 (LVJ77_09360) dprA 1161856..1162956 (-) 1101 WP_027009673.1 DNA-processing protein DprA Machinery gene
  LVJ77_RS05605 (LVJ77_09355) - 1163037..1163228 (-) 192 WP_156900841.1 hypothetical protein -
  LVJ77_RS05610 (LVJ77_09350) rnhB 1163444..1164043 (+) 600 WP_051255626.1 ribonuclease HII -
  LVJ77_RS05615 (LVJ77_09345) - 1164040..1164666 (+) 627 WP_034334674.1 triacylglycerol lipase -
  LVJ77_RS05620 (LVJ77_09340) - 1164809..1165051 (+) 243 WP_027009670.1 hypothetical protein -
  LVJ77_RS05625 (LVJ77_09335) - 1165005..1166243 (+) 1239 WP_245571944.1 replication initiation factor domain-containing protein -
  LVJ77_RS05630 (LVJ77_09330) - 1166243..1166452 (+) 210 WP_245571943.1 hypothetical protein -
  LVJ77_RS05635 (LVJ77_09325) - 1166473..1166787 (+) 315 WP_027009669.1 hypothetical protein -

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 121509.64 Da        Isoelectric Point: 6.3498

>NTDB_id=652039 LVJ77_RS05595 WP_027009674.1 1158569..1161868(+) (recC) [Conchiformibius kuhniae strain 17694]
MLHLYQSNRLEYLAELMAAVTANDPLHNPLAAEEIVVQSQGMRRYLEHFLARKHGVAANLRFALPAGWTWRLMREHLDGV
PELSPFAPDVLRWRLMRLFASAAFAEDAAFAALRGQLQPYLGNGAFAAYQLAGQLADVFDHYLVYRPDWIEAWREGRTVA
GLHEDQLWQAQLWRQLDDGTQPHRVLLWQQLLARLGTGRLPQRLSVFGIATLAPMYLQLLLHVAEHADVYVFALNPSRGY
WGDAVEAQTILRQAGEPDLSRQGHPLLASLGKQGRDFFDALAEAPLAADHAVFDDEAASPALLHTLQHHIQQQILPADAS
AQWLAEHGAWLAQRGTHAQGAVAQITADPSVEIHSAHSPLRELQILKDRILAWLDAHRDWQPHDIAVLTPDIAPYAPFVE
GVFGGSADGRVLPYSLSDVRLSRRQTLLYALEQALSLLAGRFETDKLLPLLDNEAVQRRFAIGREDLPLLHDTVARLNIH
WGADAAQRAEHGGGGGLFTWQQGLERLVLGWALPENGGLWHQMSAWHTAPDHTAVLARFAALVRLLSDTRRLWQTPATVA
QWAERMRVLAQDLCEASAEDGDAAAQLAQALSDWTAQAACADFGQTVAIETACAHMRRFLGSQSDAGFLRGGITFCSMVP
MRSLPFKAVCLLGLNDGQFPRNTKAVPFDLIAKHPQKGDRARRDDDRYLFLEALLGAREILYLSYVGRSIRTNDALAPSV
LLYELADTVAALGGTTTAELLPHWVVQHPLQGFSPRYFNGTPRLAGSRSDYADALNRTPAPAAAFADACHDGETPDNGTV
AQADFVRFWRNPLRSYLKNRLDWQAPRHDAAWDAAEPFVPSQPRLLESAYVRAREQGRDFDRLADELAAQSLMPAGKLGE
LTRRDYAVRTAALDGTLLHSPPLPEQSGVWTGASGALAYRLPHCRQAGQILTADDLPRPHRQDGGLSFADRIELLLYHLI
YCAAVDEAQASHYVSLSAPVALPPLDAAAARAALDVWLSAYRAGQNAPLPFFPRMSLRAAAKLPDWAAAEAEAAKIYHGG
YHGFAQADYPEVRLVYGRDPEAEPPYRLPAFRHLTENLFAPLQNCVAALCEQDDKAHTR

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=652039 LVJ77_RS05595 WP_027009674.1 1158569..1161868(+) (recC) [Conchiformibius kuhniae strain 17694]
ATGCTGCACCTGTATCAGTCCAACCGTTTGGAATACCTTGCCGAGCTGATGGCGGCGGTTACCGCAAACGACCCTTTGCA
CAACCCTTTGGCGGCGGAAGAAATCGTGGTGCAAAGTCAGGGCATGCGCCGTTATCTCGAGCATTTTTTGGCACGCAAAC
ACGGTGTGGCAGCGAATCTGCGCTTCGCCCTGCCCGCAGGCTGGACGTGGCGGCTGATGCGCGAACACTTGGACGGCGTG
CCCGAATTGAGCCCGTTTGCGCCCGACGTGCTGCGTTGGCGGCTGATGCGCCTGTTTGCTTCGGCGGCGTTTGCCGAAGA
TGCGGCGTTTGCGGCTTTGCGCGGGCAGTTGCAGCCGTATTTGGGCAACGGCGCGTTTGCGGCGTACCAGTTGGCGGGGC
AGCTTGCCGACGTGTTCGACCATTATTTGGTGTACCGTCCCGATTGGATTGAGGCATGGCGCGAAGGGCGCACGGTGGCG
GGTTTGCACGAAGACCAGCTTTGGCAGGCGCAGCTTTGGCGGCAGTTGGACGACGGCACGCAGCCGCACCGCGTGTTGCT
GTGGCAGCAACTGCTGGCGCGTTTGGGAACGGGACGTTTGCCGCAACGTTTGTCGGTGTTCGGCATCGCCACGCTTGCGC
CGATGTACCTGCAATTGCTGCTGCACGTTGCCGAACACGCCGATGTGTATGTGTTTGCCCTGAATCCGAGCAGGGGCTAT
TGGGGCGATGCGGTGGAAGCGCAAACGATTTTGCGGCAGGCGGGCGAGCCGGATTTGTCGCGGCAGGGACACCCCTTGCT
GGCATCCTTGGGCAAGCAGGGGCGGGATTTTTTTGACGCGCTGGCAGAAGCGCCGTTGGCGGCAGACCATGCCGTGTTTG
ACGATGAAGCGGCATCGCCCGCGCTGCTGCACACGCTGCAACACCACATTCAGCAGCAGATTTTGCCCGCCGATGCTTCG
GCGCAGTGGCTGGCGGAACACGGGGCGTGGTTGGCGCAAAGGGGCACGCACGCACAAGGCGCGGTGGCGCAAATCACTGC
CGACCCGAGCGTGGAAATCCACAGCGCCCACAGCCCGTTGCGCGAGTTGCAGATACTCAAAGACCGCATTTTGGCGTGGC
TGGACGCGCACCGCGACTGGCAGCCACACGACATCGCCGTCCTCACGCCCGACATTGCGCCGTATGCGCCGTTTGTGGAA
GGGGTGTTCGGCGGCAGTGCGGACGGGCGCGTGCTGCCGTATTCGCTCTCGGACGTGCGCCTGTCGCGGCGGCAAACGCT
GCTGTATGCTTTGGAACAGGCATTGTCGCTGTTGGCGGGGCGTTTTGAAACCGACAAGCTGCTGCCGCTTTTGGACAACG
AAGCGGTGCAACGGCGTTTTGCCATCGGGCGCGAAGACCTGCCCCTGCTGCACGACACGGTGGCGCGTTTGAACATCCAC
TGGGGCGCGGACGCGGCACAGCGTGCCGAACACGGCGGCGGCGGCGGGCTGTTCACATGGCAGCAGGGGCTGGAGCGGCT
GGTGTTGGGCTGGGCTTTGCCCGAAAACGGCGGCTTGTGGCATCAGATGAGCGCGTGGCACACCGCACCCGACCACACGG
CGGTGCTGGCGCGTTTTGCCGCGCTGGTGCGCCTGTTGTCCGACACGCGCCGCTTGTGGCAAACGCCGGCAACGGTGGCG
CAATGGGCGGAACGCATGCGCGTGTTGGCACAAGATTTGTGCGAAGCGTCTGCCGAAGACGGCGACGCGGCGGCGCAGTT
GGCACAGGCGCTTTCCGACTGGACGGCACAAGCGGCGTGCGCGGACTTCGGGCAAACGGTGGCGATTGAAACGGCATGCG
CCCACATGCGCCGTTTTCTCGGCAGCCAAAGCGATGCGGGCTTTTTGCGCGGCGGCATCACCTTTTGCAGCATGGTGCCG
ATGCGTTCGCTGCCGTTTAAAGCGGTGTGCCTGCTCGGTTTGAACGACGGTCAGTTTCCGCGCAACACCAAAGCCGTACC
GTTTGACCTGATTGCCAAGCACCCGCAAAAAGGCGACCGCGCCCGCCGCGATGACGACCGCTACCTGTTTTTGGAAGCCC
TGCTCGGGGCGCGGGAGATTTTGTATCTGTCGTATGTGGGGCGCAGCATCCGCACCAACGACGCGCTGGCGCCGTCCGTG
CTGCTCTACGAGCTGGCAGACACGGTGGCGGCACTGGGCGGAACCACAACGGCGGAGCTGTTGCCGCACTGGGTGGTGCA
ACACCCTTTGCAAGGCTTTTCGCCGCGTTATTTCAACGGCACGCCGCGCTTGGCGGGCAGCCGCAGCGATTATGCCGACG
CCCTGAACCGCACGCCCGCGCCCGCCGCCGCCTTTGCCGATGCCTGCCACGACGGTGAAACACCCGACAACGGCACGGTT
GCCCAAGCCGATTTCGTGCGTTTTTGGCGCAATCCGCTCCGCAGTTATCTGAAAAACCGTTTGGACTGGCAAGCGCCGCG
CCACGATGCGGCGTGGGACGCTGCCGAGCCGTTTGTGCCGTCCCAACCGCGCCTGCTGGAAAGCGCCTACGTCCGCGCCC
GCGAGCAGGGTCGCGATTTTGACCGGCTTGCCGATGAATTGGCGGCGCAAAGCCTGATGCCTGCGGGCAAATTGGGCGAG
CTGACCCGCCGCGACTACGCCGTCCGCACCGCCGCTTTGGACGGCACTTTGCTGCACAGCCCGCCCCTGCCCGAGCAAAG
CGGGGTGTGGACGGGCGCATCGGGCGCGTTGGCATACCGTCTGCCGCACTGCCGCCAAGCCGGACAAATCCTGACCGCCG
ACGATTTGCCCCGTCCGCACCGTCAAGACGGGGGGCTGTCGTTTGCCGACCGCATCGAGCTGCTGCTGTACCACCTGATT
TATTGTGCGGCGGTGGATGAAGCGCAGGCCAGCCATTATGTGAGCCTGTCTGCGCCCGTCGCCCTGCCGCCGCTCGATGC
CGCCGCCGCCCGCGCCGCTTTGGACGTGTGGCTGTCTGCCTACCGTGCGGGGCAAAACGCGCCTTTGCCGTTTTTCCCGC
GCATGAGCCTTCGCGCCGCCGCCAAGCTGCCCGACTGGGCGGCAGCCGAAGCCGAAGCCGCCAAAATCTATCACGGCGGC
TATCACGGCTTCGCCCAAGCCGATTACCCCGAAGTGCGCTTGGTGTACGGGCGCGACCCCGAAGCCGAACCGCCCTACCG
TTTGCCCGCATTCCGCCACCTGACCGAAAACCTGTTCGCCCCCCTGCAAAACTGCGTTGCCGCCTTGTGCGAACAGGACG
ACAAGGCTCACACGCGCTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(799-1022)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

49.678

98.908

0.491