Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   LVJ80_RS04650 Genome accession   NZ_CP091519
Coordinates   884715..885986 (-) Length   423 a.a.
NCBI ID   WP_034294928.1    Uniprot ID   A0A376BK16
Organism   Alysiella crassa strain S6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 879715..890986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ80_RS04625 (LVJ80_05325) - 880326..881789 (+) 1464 WP_051968635.1 tetratricopeptide repeat protein -
  LVJ80_RS04630 (LVJ80_05320) hfq 881917..882231 (+) 315 WP_034295644.1 RNA chaperone Hfq -
  LVJ80_RS04635 (LVJ80_05315) zapD 882403..883152 (-) 750 WP_034294937.1 cell division protein ZapD -
  LVJ80_RS04640 (LVJ80_05310) coaE 883154..883774 (-) 621 WP_034294935.1 dephospho-CoA kinase -
  LVJ80_RS04645 (LVJ80_05305) pilD 883811..884713 (-) 903 WP_051968598.1 A24 family peptidase Machinery gene
  LVJ80_RS04650 (LVJ80_05300) pilG 884715..885986 (-) 1272 WP_034294928.1 type II secretion system F family protein Machinery gene
  LVJ80_RS04655 (LVJ80_05295) pilF 886075..887760 (-) 1686 WP_034294925.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ80_RS04660 (LVJ80_05290) - 887898..888341 (-) 444 WP_084693589.1 DUF4149 domain-containing protein -
  LVJ80_RS04665 (LVJ80_05285) greA 888456..888932 (-) 477 WP_034294922.1 transcription elongation factor GreA -
  LVJ80_RS04670 (LVJ80_05280) - 889328..889831 (-) 504 WP_034294920.1 hypothetical protein -
  LVJ80_RS04675 (LVJ80_15245) - 889927..890061 (+) 135 WP_280517559.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45841.41 Da        Isoelectric Point: 10.1477

>NTDB_id=652006 LVJ80_RS04650 WP_034294928.1 884715..885986(-) (pilG) [Alysiella crassa strain S6]
MATAKKPVKKAPVKKAAPKPKQQKERGNRYQFEGRNLQTESIVRGEVVARNEEEARAKLKRRNVKVLQIVKMKKAKKQKI
TTGDIAVFTRQLSTMMKAGLPLMQAFDIVAKGHANASMTELLMSVRADVEQGTSLADAFAKHPNQFSKFYCNLVGAGEAG
GVLDSLLDKLATYMEKTEAIKKKVKSALTYPIAILVVAVVLVMVMMMFVLPEFKKVYDSMGAKLPPLTEFMMMISNAFVA
HGAFIVIGLVGSVAGGIAIVKRSPTLQKRIDAMLLKLPIFGDIVMKATIARWSRTTATLFAAGVPLVEVLDSVAGASGNI
IYEEATHEIRSKVNQGISLTSGMQAAQLFPNMVVQMAAIGEEAGALDDMLNKVAEFYEDEVDAAVDMLSSLMEPIIMVVL
GGIVGTILVAMYLPLFNLGQVVG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=652006 LVJ80_RS04650 WP_034294928.1 884715..885986(-) (pilG) [Alysiella crassa strain S6]
ATGGCTACTGCTAAAAAACCAGTCAAAAAAGCGCCTGTCAAAAAAGCCGCGCCCAAGCCTAAACAGCAAAAAGAACGTGG
TAATCGTTACCAGTTTGAAGGACGAAATTTGCAAACTGAATCCATTGTGCGCGGTGAAGTGGTTGCGCGTAATGAAGAAG
AAGCACGCGCGAAACTGAAACGCCGCAATGTGAAAGTTTTGCAAATCGTCAAAATGAAAAAGGCGAAAAAGCAAAAAATC
ACCACAGGCGATATTGCGGTGTTTACTCGCCAGCTTTCTACCATGATGAAAGCAGGTTTGCCTTTAATGCAAGCATTTGA
TATTGTGGCAAAAGGTCATGCGAATGCGTCTATGACAGAATTATTGATGTCGGTGCGTGCCGATGTGGAACAAGGTACAT
CGTTGGCAGACGCGTTTGCTAAACACCCCAATCAGTTCAGTAAATTTTACTGTAACTTGGTCGGTGCAGGTGAAGCAGGT
GGTGTATTGGATTCTTTGCTAGATAAATTAGCAACTTATATGGAAAAAACCGAAGCCATCAAGAAAAAAGTGAAAAGTGC
TTTAACTTACCCAATTGCCATTTTGGTGGTAGCAGTGGTGTTGGTGATGGTGATGATGATGTTCGTATTGCCTGAATTTA
AAAAGGTATACGACAGTATGGGCGCGAAATTGCCACCTTTGACTGAATTCATGATGATGATTTCTAATGCGTTTGTGGCG
CATGGTGCGTTTATTGTGATTGGTTTAGTGGGTTCGGTGGCGGGTGGTATTGCCATTGTGAAGCGTTCTCCGACTTTGCA
AAAACGCATTGACGCGATGTTATTAAAATTGCCGATTTTTGGTGATATTGTGATGAAAGCGACTATTGCGCGTTGGTCGC
GTACCACCGCGACACTGTTTGCGGCTGGTGTGCCATTGGTCGAAGTATTGGATTCGGTGGCAGGTGCTTCGGGCAATATT
ATTTATGAAGAAGCCACGCATGAAATTCGTTCCAAAGTGAATCAGGGTATTTCGCTGACTTCAGGTATGCAGGCTGCCCA
ATTGTTCCCGAATATGGTGGTGCAAATGGCGGCGATTGGTGAAGAAGCGGGTGCATTGGACGATATGTTAAACAAAGTTG
CCGAATTCTACGAAGATGAGGTGGATGCGGCGGTGGACATGCTGTCTTCATTGATGGAACCGATTATCATGGTGGTGTTG
GGTGGTATTGTGGGTACGATTCTGGTAGCGATGTACTTGCCGCTCTTCAACTTGGGTCAAGTGGTTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A376BK16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

64.721

93.144

0.603
  pilG Neisseria meningitidis 44/76-A

63.25

94.563

0.598
  pilC Legionella pneumophila strain ERS1305867

47.739

94.09

0.449
  pilC Pseudomonas stutzeri DSM 10701

44.444

95.745

0.426
  pilC Acinetobacter baylyi ADP1

45.596

91.253

0.416
  pilC Acinetobacter baumannii D1279779

45.714

91.017

0.416
  pilC Vibrio cholerae strain A1552

38.903

94.799

0.369