Detailed information NTG0652005

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LVJ80_RS04645
• Genome accession: NZ_CP091519
• Coordinates: 883811..884713 (-)
• Length: 300 a.a.
• NCBI ID: WP_051968598.1
• Uniprot ID: A0A376BJV5
• Organism: Alysiella crassa strain S6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 878811..889713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ80_RS04620 (LVJ80_05330)	-	879110..880252 (+)	1143	WP_034295640.1	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	-
LVJ80_RS04625 (LVJ80_05325)	-	880326..881789 (+)	1464	WP_051968635.1	tetratricopeptide repeat protein	-
LVJ80_RS04630 (LVJ80_05320)	hfq	881917..882231 (+)	315	WP_034295644.1	RNA chaperone Hfq	-
LVJ80_RS04635 (LVJ80_05315)	zapD	882403..883152 (-)	750	WP_034294937.1	cell division protein ZapD	-
LVJ80_RS04640 (LVJ80_05310)	coaE	883154..883774 (-)	621	WP_034294935.1	dephospho-CoA kinase	-
LVJ80_RS04645 (LVJ80_05305)	pilD	883811..884713 (-)	903	WP_051968598.1	A24 family peptidase	Machinery gene
LVJ80_RS04650 (LVJ80_05300)	pilG	884715..885986 (-)	1272	WP_034294928.1	type II secretion system F family protein	Machinery gene
LVJ80_RS04655 (LVJ80_05295)	pilF	886075..887760 (-)	1686	WP_034294925.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LVJ80_RS04660 (LVJ80_05290)	-	887898..888341 (-)	444	WP_084693589.1	DUF4149 domain-containing protein	-
LVJ80_RS04665 (LVJ80_05285)	greA	888456..888932 (-)	477	WP_034294922.1	transcription elongation factor GreA	-

Sequence

Protein

• Length: 300 a.a.
• Molecular weight: 33271.57 Da
• Isoelectric Point: 8.4929

>NTDB_id=652005 LVJ80_RS04645 WP_051968598.1 883811..884713(-) (pilD) [Alysiella crassa strain S6]
MENAAIFMAVLFGLLVGSFLNVVIYRLPVILNREWNEAAREQLKLNDEFINTLPENAAQTLRQHISLTAEQQGEFTLSKP
RSRCGNCGAPVKAWMNIPIISWLILRGKCHTCKTPISIRYPLVELLTGVLFGVVAWRYGWTEITVWGCLLTAFVVAMTFI
DADTQLLPDQLTLPLIWLGLLFNWHTQFVSLESAVLGAVCGYMSLWTLNKIHKILRGMDGMGYGDFKMLAAIGAWCGAAN
LPIVVMMAALTGIVAALLKRVGKGQPMAFGPCLAIAGWLIFLFHAQAVSLITWWLQKSGF

Nucleotide

• Length: 903 bp

>NTDB_id=652005 LVJ80_RS04645 WP_051968598.1 883811..884713(-) (pilD) [Alysiella crassa strain S6]
ATGGAAAATGCGGCAATTTTTATGGCGGTATTGTTCGGTTTACTCGTGGGCAGTTTTCTGAACGTTGTGATTTACCGCCT
GCCCGTTATCTTGAATCGTGAATGGAATGAGGCGGCGCGTGAGCAGTTGAAATTAAACGATGAATTCATCAACACGCTGC
CTGAAAACGCCGCCCAAACCCTGCGCCAACACATCAGTTTAACCGCCGAACAACAAGGCGAATTCACCCTATCCAAACCA
CGCTCGCGTTGCGGCAATTGCGGTGCGCCCGTGAAAGCATGGATGAATATCCCGATTATTAGCTGGTTGATTTTGCGTGG
AAAATGCCACACTTGTAAAACGCCGATTAGCATACGTTACCCTTTGGTGGAATTGCTGACGGGCGTGTTGTTTGGTGTGG
TGGCGTGGCGATATGGCTGGACGGAAATCACGGTCTGGGGCTGTTTGCTGACTGCGTTTGTGGTGGCGATGACTTTTATT
GACGCGGACACGCAATTATTGCCCGACCAATTGACTTTGCCTTTGATTTGGCTGGGTTTATTGTTTAACTGGCACACTCA
ATTTGTGTCGTTAGAATCTGCCGTGTTGGGCGCGGTGTGCGGTTATATGAGTTTGTGGACATTGAATAAAATCCACAAAA
TCCTGCGTGGCATGGACGGCATGGGTTATGGCGATTTCAAAATGCTGGCGGCGATTGGTGCGTGGTGTGGGGCGGCGAAT
TTGCCCATTGTGGTAATGATGGCTGCGCTGACGGGCATTGTGGCGGCATTGCTTAAACGCGTGGGCAAGGGGCAACCGAT
GGCGTTTGGTCCTTGTTTGGCGATTGCGGGTTGGTTGATTTTTCTGTTTCATGCTCAAGCAGTTAGTTTGATTACTTGGT
GGCTGCAAAAATCAGGTTTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (11-138)

• Type IV leader peptidase family (Peptidase_A24) (149-256)

3D structure

• AlphaFold DB: A0A376BJV5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	52.901	97.667	0.517
pilD	Vibrio cholerae strain A1552	45.329	96.333	0.437
pilD	Acinetobacter nosocomialis M2	44.483	96.667	0.43
pilD	Acinetobacter baumannii D1279779	44.483	96.667	0.43
pilD	Vibrio campbellii strain DS40M4	42.907	96.333	0.413