Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG985_RS21220 Genome accession   NZ_CP108046
Coordinates   4696778..4698187 (+) Length   469 a.a.
NCBI ID   WP_371669913.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00289     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4691778..4703187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG985_RS21205 (OG985_21080) - 4692880..4693812 (-) 933 WP_371669910.1 Ppx/GppA family phosphatase -
  OG985_RS21210 (OG985_21085) - 4693884..4694732 (+) 849 WP_371669911.1 hypothetical protein -
  OG985_RS21215 (OG985_21090) - 4694799..4696538 (-) 1740 WP_371669912.1 hypothetical protein -
  OG985_RS21220 (OG985_21095) radA/sms 4696778..4698187 (+) 1410 WP_371669913.1 DNA repair protein RadA Machinery gene
  OG985_RS21225 (OG985_21100) disA 4698267..4699391 (+) 1125 WP_371669914.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG985_RS21230 (OG985_21105) - 4699663..4700508 (-) 846 WP_371669915.1 hypothetical protein -
  OG985_RS21235 (OG985_21110) - 4700975..4701910 (+) 936 WP_371669916.1 A/G-specific adenine glycosylase -
  OG985_RS21240 (OG985_21115) - 4702159..4702698 (+) 540 WP_356045295.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49657.80 Da        Isoelectric Point: 8.0022

>NTDB_id=652005 OG985_RS21220 WP_371669913.1 4696778..4698187(+) (radA/sms) [Streptomyces sp. NBC_00289]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAATDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPAGMKVQEVADMGEALSVLPRSRRREAPRDAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=652005 OG985_RS21220 WP_371669913.1 4696778..4698187(+) (radA/sms) [Streptomyces sp. NBC_00289]
ATGGCTGCCCGCACGAAGACCACCAAGGACCGGCCGTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCTGTCCGCACGACGGCCCCGGGGC
GTGTCACCACCTCGGCGGTGCCCATCGGACAGGTCGACGGCAGGCAGGCCACGGCCCGCCCCACGGGCGTGCCCGAGCTG
GACCGCGTGCTCGGCGGCGGACTGGTGCCCGGCGCCGTCGTCCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGACCCT
CCTTCTCGACGTGGCGGCCAAGTCGGCGAGTGACGAACACCGCACGCTGTACGTCACCGGTGAGGAGTCGGCGAGTCAGG
TGCGGCTGCGGGCCGACCGCATCAAGGCCATCGACGACCACCTCTATCTCGCCGCCGAGACCGATCTGGCCGCGGTCCTC
GGGCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCGTCGACTCCGTGCAGACCGTGGCCTCCCCGGAGATCGACGGGGC
CCCGGGCGGCATGGCACAGGTGCGGGAGGTGGCCGGGGCCCTGATCCGGGCCTCCAAGGAACGCGGGATGTCGACCCTCC
TGGTGGGCCATGTCACCAAGGACGGGGCAATCGCCGGACCCCGCCTCCTGGAACACCTGGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCCGGCTCGTACGGGGTGTCAAGAACCGCTACGGCACCACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGGCGGGCGGAACCGGTGCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTGGCCGAAGTCCAGGCACTCACCGTCGACTCACAGATT
CCCTCGCCCCGGCGGACCACGTCCGGCCTGGAGACGTCCCGCGTCTCGATGATGCTCGCCGTTCTCGAACAGCGCGGCAG
GATCAGCGCCCTGGGCAAAAGGGACATCTACTCCGCGACGGTCGGCGGTGTGAAGTTGTCGGAGCCGGCCGCCGACCTCG
CGATCGCCCTCGCGCTGGCGTCGGCCGCGACCGACACCCCGCTGCCCAAGAACCTGGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTTACGGGCGTCCAGCGCCGGCTCGCCGAAGCACACCGTCTGGGCTTCACCCACGCCCTCGT
ACCGACCGATCCCGGCAAGATCCCGGCCGGTATGAAGGTCCAGGAAGTCGCGGACATGGGAGAGGCCCTGAGTGTCCTTC
CACGGTCGCGTCGCAGAGAGGCCCCACGGGATGCCGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.681

96.162

0.42
  radA Streptococcus pneumoniae D39

44.235

90.618

0.401
  radA Streptococcus pneumoniae R6

44.235

90.618

0.401
  radA Streptococcus pneumoniae Rx1

44.235

90.618

0.401
  radA Streptococcus mitis SK321

44.235

90.618

0.401
  radA Streptococcus mitis NCTC 12261

44.235

90.618

0.401
  radA Streptococcus pneumoniae TIGR4

44.235

90.618

0.401