Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA05_RS12005 Genome accession   NZ_CP108032
Coordinates   2716414..2717097 (-) Length   227 a.a.
NCBI ID   WP_313946324.1    Uniprot ID   A0ACC6PUM4
Organism   Streptomyces sp. NBC_00306     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2711414..2722097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS11995 (OHA05_12015) - 2713828..2714781 (+) 954 WP_328860552.1 hypothetical protein -
  OHA05_RS12000 (OHA05_12020) clpX 2714985..2716268 (-) 1284 WP_313946325.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA05_RS12005 (OHA05_12025) clpP 2716414..2717097 (-) 684 WP_313946324.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA05_RS12010 (OHA05_12030) - 2717153..2717758 (-) 606 WP_313949012.1 ATP-dependent Clp protease proteolytic subunit -
  OHA05_RS12015 (OHA05_12035) tig 2717999..2719390 (-) 1392 WP_328860553.1 trigger factor -
  OHA05_RS12030 (OHA05_12050) - 2719945..2720967 (-) 1023 WP_313946322.1 alcohol dehydrogenase -
  OHA05_RS12035 (OHA05_12055) - 2721059..2721253 (-) 195 WP_313946321.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24792.19 Da        Isoelectric Point: 4.7914

>NTDB_id=651745 OHA05_RS12005 WP_313946324.1 2716414..2717097(-) (clpP) [Streptomyces sp. NBC_00306]
MVNTHMSNYPGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRVQLEEMLAKHSTTPIEKVRDDIERDKILTAEDALAYGLVDQIVSTRKSTAAAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=651745 OHA05_RS12005 WP_313946324.1 2716414..2717097(-) (clpP) [Streptomyces sp. NBC_00306]
ATGGTGAACACCCATATGAGCAACTACCCCGGCGCCTCCGCCAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTCGAGCGCACGTCGCAGGGTGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCATCGGCCAATGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCCATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACCGTGTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGCACCC
CCGGCAAGCGGATGGCCCTGCCGCACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGGGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGTGTGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCC
CATCGAGAAGGTCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCCCTGGCGTACGGTCTTGTCGACC
AGATCGTCTCCACCCGCAAGAGCACGGCCGCAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.474

83.7

0.414
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.809

82.819

0.388
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus pyogenes MGAS315

43.814

85.463

0.374
  clpP Streptococcus pyogenes JRS4

43.814

85.463

0.374
  clpP Streptococcus pneumoniae D39

44.041

85.022

0.374
  clpP Streptococcus pneumoniae Rx1

44.041

85.022

0.374
  clpP Streptococcus pneumoniae R6

44.041

85.022

0.374
  clpP Streptococcus pneumoniae TIGR4

44.041

85.022

0.374
  clpP Streptococcus mutans UA159

43.299

85.463

0.37
  clpP Lactococcus lactis subsp. cremoris KW2

43.455

84.141

0.366
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.932

84.141

0.361