Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG905_RS26605 Genome accession   NZ_CP108019
Coordinates   5812901..5813575 (+) Length   224 a.a.
NCBI ID   WP_313904719.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5807901..5818575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS26575 (OG905_26600) - 5808222..5809376 (-) 1155 WP_328677828.1 acyltransferase family protein -
  OG905_RS26580 (OG905_26605) - 5809800..5809994 (+) 195 WP_266476365.1 hypothetical protein -
  OG905_RS26595 (OG905_26620) tig 5810613..5812010 (+) 1398 WP_328677829.1 trigger factor -
  OG905_RS26600 (OG905_26625) - 5812242..5812859 (+) 618 WP_328677830.1 ATP-dependent Clp protease proteolytic subunit -
  OG905_RS26605 (OG905_26630) clpP 5812901..5813575 (+) 675 WP_313904719.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG905_RS26610 (OG905_26635) clpX 5813721..5815013 (+) 1293 WP_328677831.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG905_RS26615 (OG905_26640) - 5815080..5816033 (-) 954 WP_328677832.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24557.93 Da        Isoelectric Point: 4.6814

>NTDB_id=651532 OG905_RS26605 WP_313904719.1 5812901..5813575(+) (clpP) [Streptomyces sp. NBC_00322]
MVNTHMSNFSASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDR
DISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILIHQPSSQTGREQLSDLE
IAANEILRMRTQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKSTAAAAA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=651532 OG905_RS26605 WP_313904719.1 5812901..5813575(+) (clpP) [Streptomyces sp. NBC_00322]
ATGGTGAACACCCACATGAGTAACTTCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTACGTCGTCCC
GCGCTTCGTCGAGCGCACCTCCCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTCATCTTCC
TCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGC
GACATCTCCATCTACATCAACAGCCCCGGCGGCTCGTTCACGGCCCTCACAGCCATCTACGACACGATGCAGTTCGTGAA
GCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGTACCCCCGGCAAGC
GGATGGCCCTGCCCAACGCCCGCATCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCCGACCTGGAG
ATCGCGGCCAACGAAATCCTGCGGATGCGTACGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGATCGAGAA
GATCCGTGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCGCTTGCGTACGGCCTCGTCGACCAGATCGTCT
CGACCCGTAAGAGCACGGCCGCAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(35-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

84.821

0.424
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

83.929

0.411
  clpP Streptococcus thermophilus LMD-9

44.845

86.607

0.388
  clpP Streptococcus pyogenes JRS4

44.845

86.607

0.388
  clpP Streptococcus pyogenes MGAS315

44.845

86.607

0.388
  clpP Streptococcus thermophilus LMG 18311

44.845

86.607

0.388
  clpP Streptococcus mutans UA159

45.263

84.821

0.384
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

85.268

0.379
  clpP Streptococcus pneumoniae R6

44.041

86.161

0.379
  clpP Streptococcus pneumoniae TIGR4

44.041

86.161

0.379
  clpP Streptococcus pneumoniae D39

44.041

86.161

0.379
  clpP Streptococcus pneumoniae Rx1

44.041

86.161

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

85.268

0.375