Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   L3V65_RS11735 Genome accession   NZ_CP091468
Coordinates   2356778..2357593 (-) Length   271 a.a.
NCBI ID   WP_237348469.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain 19-1-JSRL-34-1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2351778..2362593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V65_RS11715 (L3V65_11715) - 2352069..2352227 (-) 159 WP_237348466.1 small, acid-soluble spore protein K -
  L3V65_RS11720 (L3V65_11720) - 2352314..2353294 (-) 981 WP_237348467.1 metal-dependent hydrolase -
  L3V65_RS11725 (L3V65_11725) mutY 2353473..2354591 (+) 1119 WP_237348468.1 A/G-specific adenine glycosylase -
  L3V65_RS11730 (L3V65_11730) - 2356480..2356797 (-) 318 WP_035183866.1 YfhH family protein -
  L3V65_RS11735 (L3V65_11735) recX 2356778..2357593 (-) 816 WP_237348469.1 recombination regulator RecX Regulator
  L3V65_RS11740 (L3V65_11740) - 2357682..2357804 (+) 123 WP_017552869.1 YfhE family protein -
  L3V65_RS11745 (L3V65_11745) - 2357883..2358065 (+) 183 WP_061566697.1 YfhD family protein -
  L3V65_RS11750 (L3V65_11750) trpA 2358325..2359116 (-) 792 WP_237348470.1 tryptophan synthase subunit alpha -
  L3V65_RS11755 (L3V65_11755) - 2359109..2359255 (-) 147 WP_201059174.1 hypothetical protein -
  L3V65_RS11760 (L3V65_11760) trpB 2359248..2360453 (-) 1206 WP_237348471.1 tryptophan synthase subunit beta -
  L3V65_RS11765 (L3V65_11765) trpCF 2360431..2361855 (-) 1425 WP_237348472.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 31645.49 Da        Isoelectric Point: 8.2556

>NTDB_id=651533 L3V65_RS11735 WP_237348469.1 2356778..2357593(-) (recX) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
MPVITKISLQKNNKERYNIFLDGQYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIHFLSYRMRSEKEV
RDDLIKKEFAPEVIRSVILKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVIERELQQKGIPPELIEKALEIFDANQQVEH
ALVLAEKLSRQHARLSEKLLKQKVKQGLTVKGYPPEVISAAMAALHVEKDEETEWKALLQHAEKAKRKYGKFSGYVYRQK
MKQFLYRKGFPVDLIDRYLREEEDGDGKKIQ

Nucleotide


Download         Length: 816 bp        

>NTDB_id=651533 L3V65_RS11735 WP_237348469.1 2356778..2357593(-) (recX) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
GTGCCTGTCATTACAAAAATTTCGCTTCAAAAAAACAATAAAGAACGTTACAATATTTTTCTTGACGGCCAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAGGGGAAAGAATTGGATGAGCTTGATATTGAAGCAATCC
TTGCCGAGGATGATATCCGGAAAGGCGTCAATACCGCCATCCATTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCATCCGGAGTGTCATATTAAAGCTTTATGAAATGCAGTATCT
TGATGATGCGGAATTTGCCGCAAGTTTCGTGCGGACACAAATGAATACAACCCATAAAGGGCCTGTTGTCATTGAAAGGG
AACTTCAGCAAAAAGGCATTCCACCGGAGCTGATCGAAAAGGCGCTTGAAATTTTTGATGCTAATCAGCAAGTGGAACAC
GCCCTTGTCCTGGCAGAAAAACTTTCCAGGCAGCATGCCCGGTTGTCGGAGAAGCTTTTAAAACAAAAAGTGAAGCAGGG
GCTTACAGTAAAAGGCTATCCGCCTGAAGTGATTTCCGCTGCGATGGCGGCGCTTCATGTTGAAAAGGATGAAGAAACGG
AATGGAAAGCACTTCTTCAGCATGCTGAAAAAGCAAAGCGCAAATACGGAAAGTTTTCGGGATATGTATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGGTTGATTTAATAGACCGCTACTTGCGAGAAGAGGAGGATGGAGATGG
AAAAAAGATACAGTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.471

97.048

0.509