NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG485_RS16410	Genome accession	NZ_CP108013
Coordinates	3749216..3749896 (-)	Length	226 a.a.
NCBI ID	WP_328452471.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00328
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3744216..3754896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG485_RS16395 (OG485_16415)	-	3746251..3747213 (+)	963	WP_328669111.1	hypothetical protein	-
OG485_RS16400 (OG485_16420)	-	3747289..3747564 (-)	276	WP_328669112.1	hypothetical protein	-
OG485_RS16405 (OG485_16425)	clpX	3747769..3749055 (-)	1287	WP_151471405.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG485_RS16410 (OG485_16430)	clpP	3749216..3749896 (-)	681	WP_328452471.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG485_RS16415 (OG485_16435)	clpP	3750013..3750618 (-)	606	WP_328674493.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG485_RS16420 (OG485_16440)	tig	3751123..3752508 (-)	1386	WP_328669113.1	trigger factor	-
OG485_RS16435 (OG485_16455)	-	3753078..3754088 (-)	1011	WP_328669114.1	site-specific integrase	-
OG485_RS16440 (OG485_16460)	-	3754244..3754456 (-)	213	WP_328669115.1	excisionase family DNA-binding protein	-

Sequence

Protein

Download Length: 226 a.a. Molecular weight: 24923.36 Da Isoelectric Point: 4.6288

                                >NTDB_id=651419 OG485_RS16410 WP_328452471.1 3749216..3749896(-) (clpP) [Streptomyces sp. NBC_00328]

MNDFPGSGLFARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP

DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD

LEIAANEILRMRGQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide

Download Length: 681 bp

                                >NTDB_id=651419 OG485_RS16410 WP_328452471.1 3749216..3749896(-) (clpP) [Streptomyces sp. NBC_00328]

GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT

CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA

TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC

GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCATTTACGACACCATGCAGTT

CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG

GCAAGCGCATGGCGCTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGGCAGGTCTCGGAC

CTCGAGATCGCCGCGAACGAGATCCTCCGGATGCGTGGTCAGCTCGAAGACATGCTGGCCAAGCACTCGACGACCCCGAT

CGAGAAGATCCGTGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCACTGGCCTACGGCCTGATCGACCAGA

TCATCTCCACCCGGAAGATGAACAACTCCGCGGTCGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.632	84.071	0.442
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50.532	83.186	0.42
clpP	Streptococcus mutans UA159	45.729	88.053	0.403
clpP	Lactococcus lactis subsp. cremoris KW2	45.729	88.053	0.403
clpP	Streptococcus thermophilus LMD-9	46.667	86.283	0.403
clpP	Streptococcus thermophilus LMG 18311	46.667	86.283	0.403
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.724	88.053	0.394
clpP	Streptococcus pyogenes JRS4	45.641	86.283	0.394
clpP	Streptococcus pyogenes MGAS315	45.641	86.283	0.394
clpP	Streptococcus pneumoniae D39	44.898	86.726	0.389
clpP	Streptococcus pneumoniae Rx1	44.898	86.726	0.389
clpP	Streptococcus pneumoniae R6	44.898	86.726	0.389
clpP	Streptococcus pneumoniae TIGR4	44.898	86.726	0.389

Detailed information NTG0651419