Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LGY76_RS17600 Genome accession   NZ_CP091452
Coordinates   3620937..3621995 (-) Length   352 a.a.
NCBI ID   WP_005119265.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB329     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3615937..3626995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGY76_RS17575 aroK 3616212..3616781 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LGY76_RS17580 pilQ 3616793..3618958 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  LGY76_RS17585 pilP 3619021..3619548 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LGY76_RS17590 pilO 3619559..3620299 (-) 741 WP_071710275.1 type 4a pilus biogenesis protein PilO Machinery gene
  LGY76_RS17595 pilN 3620296..3620937 (-) 642 WP_000201231.1 PilN domain-containing protein Machinery gene
  LGY76_RS17600 pilM 3620937..3621995 (-) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  LGY76_RS17605 ponA 3622156..3624711 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  LGY76_RS17610 - 3624729..3625553 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  LGY76_RS17615 - 3625556..3625888 (-) 333 WP_000169594.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39000.54 Da        Isoelectric Point: 4.4618

>NTDB_id=651418 LGY76_RS17600 WP_005119265.1 3620937..3621995(-) (pilM) [Acinetobacter baumannii strain AB329]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDSEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
VDLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=651418 LGY76_RS17600 WP_005119265.1 3620937..3621995(-) (pilM) [Acinetobacter baumannii strain AB329]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGACGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTCTGAGGTTTTGCCGGATCGTCTTG
CGAATCCAAATCGTGTAAATGTGCTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACCCGCGTTGAAGTGCTTGAATTG
GTAGATTTAAATCCTAAATTGGCTGATGTTGAAAGTTACGCGGTTGAACGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGCCATACCATGACGACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTCTTTGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGAAGAA
GCAAGCCGAGCGAAAAAAGATCGTTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGTTCACTACAATTTTTCTTTTCTTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCCAAGCTTTTGCAGCAAAAATTAGGTTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

99.432

100

0.994
  comM Acinetobacter nosocomialis M2

98.58

100

0.986
  comM Acinetobacter baylyi ADP1

80.966

100

0.81
  pilM Legionella pneumophila strain ERS1305867

41.525

100

0.418