Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA37_RS25665 Genome accession   NZ_CP108006
Coordinates   5694453..5695103 (+) Length   216 a.a.
NCBI ID   WP_243334852.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5689453..5700103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS25635 (OHA37_25640) - 5689973..5690176 (+) 204 WP_266908910.1 excisionase family DNA-binding protein -
  OHA37_RS25640 (OHA37_25645) - 5690176..5691384 (+) 1209 WP_266908912.1 tyrosine-type recombinase/integrase -
  OHA37_RS25655 (OHA37_25660) tig 5691989..5693401 (+) 1413 WP_266908914.1 trigger factor -
  OHA37_RS25660 (OHA37_25665) - 5693723..5694340 (+) 618 WP_250739480.1 ATP-dependent Clp protease proteolytic subunit -
  OHA37_RS25665 (OHA37_25670) clpP 5694453..5695103 (+) 651 WP_243334852.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA37_RS25670 (OHA37_25675) clpX 5695258..5696544 (+) 1287 WP_250739478.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA37_RS25675 (OHA37_25680) - 5697053..5698024 (-) 972 WP_266908918.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23611.84 Da        Isoelectric Point: 4.5562

>NTDB_id=651272 OHA37_RS25665 WP_243334852.1 5694453..5695103(+) (clpP) [Streptomyces sp. NBC_00335]
MNNLSPASGLYTGAPVDNRYVVPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMDPDRDIYL
YINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGAPGKRMALPNARVLIHQPSGGTGREQLSDLEIAAN
EILRMRDQLENMLATHSSTPIEKIRDDIERDKILTAQDALAYGLIDQVVATRKTSN

Nucleotide


Download         Length: 651 bp        

>NTDB_id=651272 OHA37_RS25665 WP_243334852.1 5694453..5695103(+) (clpP) [Streptomyces sp. NBC_00335]
ATGAACAACCTTTCTCCCGCGAGCGGCCTCTACACCGGCGCGCCGGTGGACAACCGCTACGTCGTGCCGCGCTTCGTGGA
GCGCACCTCGCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCATCATCTTCCTCGGCGTGCAGA
TCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTACCTG
TACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGTGAAGCCGGACATCTC
GACGGTCTGCATGGGCCAGGCGGCCTCTGCCGCCGCCGTCCTGCTCGCCGCCGGCGCGCCCGGCAAGCGCATGGCGCTGC
CGAACGCCCGCGTGCTGATCCACCAGCCCTCGGGCGGCACCGGCCGTGAGCAGCTCTCCGACCTGGAGATCGCGGCCAAC
GAGATCCTGCGCATGCGCGACCAGCTGGAGAACATGCTGGCCACGCACTCCTCGACGCCGATCGAGAAGATCCGCGACGA
CATCGAGCGCGACAAGATCCTGACGGCCCAGGACGCGCTGGCGTACGGCCTGATCGACCAGGTCGTCGCGACCCGCAAGA
CTTCGAACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(31-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.91

87.5

0.463
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.128

87.037

0.454
  clpP Streptococcus pneumoniae D39

47.644

88.426

0.421
  clpP Streptococcus pneumoniae R6

47.644

88.426

0.421
  clpP Streptococcus pneumoniae TIGR4

47.644

88.426

0.421
  clpP Streptococcus pneumoniae Rx1

47.644

88.426

0.421
  clpP Streptococcus thermophilus LMD-9

46.392

89.815

0.417
  clpP Streptococcus thermophilus LMG 18311

46.392

89.815

0.417
  clpP Streptococcus mutans UA159

47.368

87.963

0.417
  clpP Streptococcus pyogenes JRS4

46.316

87.963

0.407
  clpP Streptococcus pyogenes MGAS315

46.316

87.963

0.407
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

88.426

0.407
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

88.426

0.398