Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHS16_RS20910 Genome accession   NZ_CP107996
Coordinates   4640662..4641345 (+) Length   227 a.a.
NCBI ID   WP_328538748.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4635662..4646345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS20880 (OHS16_20880) - 4635821..4636996 (-) 1176 WP_328538744.1 acyltransferase family protein -
  OHS16_RS20885 (OHS16_20885) - 4637481..4637675 (+) 195 WP_328538745.1 hypothetical protein -
  OHS16_RS20900 (OHS16_20900) tig 4638339..4639727 (+) 1389 WP_328538746.1 trigger factor -
  OHS16_RS20905 (OHS16_20905) clpP 4639994..4640611 (+) 618 WP_328538747.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS16_RS20910 (OHS16_20910) clpP 4640662..4641345 (+) 684 WP_328538748.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS16_RS20915 (OHS16_20915) clpX 4641502..4642794 (+) 1293 WP_328538749.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHS16_RS20920 (OHS16_20920) - 4642875..4643885 (-) 1011 WP_328538750.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24960.38 Da        Isoelectric Point: 4.8050

>NTDB_id=650940 OHS16_RS20910 WP_328538748.1 4640662..4641345(+) (clpP) [Streptomyces sp. NBC_00344]
MVNTHMNDHSASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSD
LEIAAREILRMRTQLEDLLAKHSTTPIEKIRDDIERDKILTAEEALAYGLVDQIVSTRKGSVGMLSN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=650940 OHS16_RS20910 WP_328538748.1 4640662..4641345(+) (clpP) [Streptomyces sp. NBC_00344]
ATGGTGAACACCCACATGAACGACCACTCCGCTTCCGCCAGCGGCCTGTACACCGGCCCGCAGGTCGACAACCGCTACAT
CGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTATGCGAAGCTCTTCGAGGAGCGTGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTCTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCGATCTACATCAACAGCCCGGGCGGCTCGTTCACGGCCCTTACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTCCTGCTGGCCGCCGGCACCCCCG
GCAAGCGCATGGCGCTTCCGAACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCCGAC
CTGGAGATCGCGGCCCGTGAAATCCTGCGTATGCGGACCCAGTTGGAGGATCTGCTGGCGAAGCACTCGACCACTCCGAT
CGAGAAGATCCGGGATGACATCGAGCGCGACAAGATCCTCACGGCTGAGGAAGCGCTCGCATACGGCCTGGTCGATCAGA
TCGTCTCGACCCGCAAGGGCTCCGTCGGGATGCTGTCCAACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

83.7

0.427
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.206

83.26

0.41
  clpP Streptococcus thermophilus LMD-9

45.361

85.463

0.388
  clpP Streptococcus pyogenes JRS4

45.361

85.463

0.388
  clpP Streptococcus pyogenes MGAS315

45.361

85.463

0.388
  clpP Streptococcus thermophilus LMG 18311

45.361

85.463

0.388
  clpP Streptococcus mutans UA159

45.789

83.7

0.383
  clpP Streptococcus pneumoniae Rx1

44.56

85.022

0.379
  clpP Streptococcus pneumoniae D39

44.56

85.022

0.379
  clpP Streptococcus pneumoniae R6

44.56

85.022

0.379
  clpP Streptococcus pneumoniae TIGR4

44.56

85.022

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

84.141

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.141

0.374