Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT74_RS25465 Genome accession   NZ_CP107983
Coordinates   5564501..5565172 (+) Length   223 a.a.
NCBI ID   WP_323139594.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00354     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5559501..5570172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS25435 (OHT74_25460) - 5559680..5559886 (-) 207 WP_266667044.1 hypothetical protein -
  OHT74_RS25440 (OHT74_25465) - 5560573..5561022 (+) 450 WP_328621496.1 hypothetical protein -
  OHT74_RS25455 (OHT74_25480) tig 5562071..5563474 (+) 1404 WP_266667047.1 trigger factor -
  OHT74_RS25460 (OHT74_25485) - 5563798..5564415 (+) 618 WP_266667049.1 ATP-dependent Clp protease proteolytic subunit -
  OHT74_RS25465 (OHT74_25490) clpP 5564501..5565172 (+) 672 WP_323139594.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT74_RS25470 (OHT74_25495) clpX 5565326..5566612 (+) 1287 WP_030159377.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT74_RS25475 (OHT74_25500) - 5566780..5567055 (+) 276 WP_328621497.1 hypothetical protein -
  OHT74_RS25480 (OHT74_25505) - 5567108..5568043 (-) 936 WP_328621498.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24600.08 Da        Isoelectric Point: 4.9265

>NTDB_id=650779 OHT74_RS25465 WP_323139594.1 5564501..5565172(+) (clpP) [Streptomyces sp. NBC_00354]
MVNTQMHMNNLSPASGLYTGAPVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLS
DLEIAAREILRMRDQLETMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide


Download         Length: 672 bp        

>NTDB_id=650779 OHT74_RS25465 WP_323139594.1 5564501..5565172(+) (clpP) [Streptomyces sp. NBC_00354]
ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCGCCGGTGGACAACCGCTA
CGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTACTGCTGGCCGCCGGCACCC
CCGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCGTCGGGCGGCACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAGGGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACCACGCC
GATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACC
AGATCGTCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

85.202

0.453
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

84.305

0.422
  clpP Streptococcus thermophilus LMD-9

46.392

86.996

0.404
  clpP Streptococcus pyogenes JRS4

46.392

86.996

0.404
  clpP Streptococcus pyogenes MGAS315

46.392

86.996

0.404
  clpP Streptococcus thermophilus LMG 18311

46.392

86.996

0.404
  clpP Streptococcus mutans UA159

46.842

85.202

0.399
  clpP Streptococcus pneumoniae Rx1

46.073

85.65

0.395
  clpP Streptococcus pneumoniae D39

46.073

85.65

0.395
  clpP Streptococcus pneumoniae TIGR4

46.073

85.65

0.395
  clpP Streptococcus pneumoniae R6

46.073

85.65

0.395
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

85.65

0.39
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

85.65

0.381