Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG996_RS30105 Genome accession   NZ_CP107971
Coordinates   6560050..6560730 (+) Length   226 a.a.
NCBI ID   WP_323178393.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00366     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6555050..6565730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG996_RS30075 (OG996_30065) - 6555438..6556835 (-) 1398 WP_328431467.1 hypothetical protein -
  OG996_RS30080 (OG996_30070) - 6556862..6557083 (+) 222 Protein_5948 cation transporter -
  OG996_RS30095 (OG996_30085) tig 6557702..6559099 (+) 1398 WP_266514325.1 trigger factor -
  OG996_RS30100 (OG996_30090) clpP 6559380..6560000 (+) 621 WP_323178394.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG996_RS30105 (OG996_30095) clpP 6560050..6560730 (+) 681 WP_323178393.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG996_RS30110 (OG996_30100) clpX 6560909..6562198 (+) 1290 WP_266514322.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG996_RS30115 (OG996_30105) - 6562443..6563405 (-) 963 WP_266514319.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25023.48 Da        Isoelectric Point: 4.6548

>NTDB_id=650527 OG996_RS30105 WP_323178393.1 6560050..6560730(+) (clpP) [Streptomyces sp. NBC_00366]
MNDFPGSGLFDRTRAEYTGPAAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEEALSYGLVDQIISTRKMNNAAVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=650527 OG996_RS30105 WP_323178393.1 6560050..6560730(+) (clpP) [Streptomyces sp. NBC_00366]
GTGAACGACTTCCCCGGCAGCGGCCTGTTCGACCGCACACGCGCCGAGTACACGGGTCCCGCGGCGGAGTCCCGTTACGT
CATCCCGCGCTTCGTCGAGCGGACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTGGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACTGCGATCTACGACACCATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCCTACAGCGAGACGGGCCGCGGCCAAGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCGCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGGCGCTCTCGTACGGCCTGGTCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGCCGTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376